Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00323 CCAACCAGCGCAACAATGGCCGCAGCCATACCTGGTCTCCTCCTCCTTCTCTTCTCCACAGCCATGGTAATCACCGCCGATCAGTCAACCCTGAGAACGGAGTCGGAGATAATGGAAATATATACCTCCTGGATGGCGAAGCACCGTAAGTCATACAACGCGGTGGGCGAAGAGCAGAAGAGATTTGGAATTTTTAAGGATAATCTGAGATTCATTGATGAGCACAACGCTCAAAACCGATCGTACGAGGTGGGTCTGAACAAGTTTGCCGATCTGAGCAACGAGGAGTACAGAGCCATGTATTTGGGAGTAAGGAGCGAATCCGCCCGGCGAGTTATGAAGGCGAAGAGGTCGAGCCAGCGCTACGCTTTCAGAGCCGGCGATAGGCTACCTAAGGCGGTGGATTGGAGGGCGAAAGGTGCAGTAAATCCTGTCAAAGATCAAGGATACTGCGGAAGCTGCTGGGCGTTCTCAACGATTGGTGCAGTGGAAGGATTAAACCAGATCGTCACCGGAGAATTGATCTCTCTCTCAGAGCAGGAGCTCGTTGACTGCGACAGGGACTACGACGCCGGCTGCAATGGCGGACTGATGGACTACGCGTTCCAGTTCATCATCGACAATGGCGGAATCGACAGCGAGGACGATTACCCTTATGAAGGAGTAGACGGCCAATGTGATCTCAATAGGAAGAGCGCAAAGGTCGTAAGCATCGATTCGTACGAGGACGTTCCGGCTTACAACGAGCTAGCATTGAAGAAGGCTGTCGCTCATCAACCTGTCAGCGTCGCCATTGAAGCCGGTGGAAGAACTTTTCAATTCTACCAGTCGGGGGTATTTACCGGCGAATGCGGATCGGCGTTGGACCACGGGGTGGTAGCAGTTGGCTATGGCAGCGAAAAGGGCGTTGACTACTGGCTTGTGAGGAACTCCTGGGGAAGTGATTGGGGAGAAAATGGGTACATAAAAATGGAGCGTAACGTAGAAACCTACACAGGCAAATGTGGAATTGCAATGGAGGCATCCTACCCAGTAAAGAACAGCGAGCAGAACCCG 1056 52.27 PTSATMAAAIPGLLLLLFSTAMVITADQSTLRTESEIMEIYTSWMAKHRKSYNAVGEEQKRFGIFKDNLRFIDEHNAQNRSYEVGLNKFADLSNEEYRAMYLGVRSESARRVMKAKRSSQRYAFRAGDRLPKAVDWRAKGAVNPVKDQGYCGSCWAFSTIGAVEGLNQIVTGELISLSEQELVDCDRDYDAGCNGGLMDYAFQFIIDNGGIDSEDDYPYEGVDGQCDLNRKSAKVVSIDSYEDVPAYNELALKKAVAHQPVSVAIEAGGRTFQFYQSGVFTGECGSALDHGVVAVGYGSEKGVDYWLVRNSWGSDWGENGYIKMERNVETYTGKCGIAMEASYPVKNSEQNP 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14770096 14772216 - Bpe024558 Bpe15g00323 116002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00323 352 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
Bpe15g00323 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Bpe15g00323 352 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508|GO:0008234
Bpe15g00323 352 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Bpe15g00323 352 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508|GO:0008234
Bpe15g00323 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Bpe15g00323 352 SMART Inhibitor_I29_2 41 97 IPR013201 -
Bpe15g00323 352 Pfam Cathepsin propeptide inhibitor domain (I29) 41 97 IPR013201 -
Bpe15g00323 352 Gene3D Cysteine proteinases 17 347 - -
Bpe15g00323 352 PANTHER CYSTEINE PROTEASE 23 348 - -
Bpe15g00323 352 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 348 - -
Bpe15g00323 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Bpe15g00323 352 SMART pept_c1 130 345 IPR000668 GO:0006508|GO:0008234
Bpe15g00323 352 SUPERFAMILY Cysteine proteinases 33 345 IPR038765 -
Bpe15g00323 352 CDD Peptidase_C1A 131 344 IPR039417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00323 K25899 GCP1, RDL1; germination-specific cysteine protease 1 [EC:3.4.22.-] - jre:108985752 534.643
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00184 Bpe15g00323 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00293 Bpe-Chr12:3686993 Bpe15g00323 Bpe-Chr15:14770096 3.64E-165 dispersed
Bpe15g00130 Bpe-Chr15:11233300 Bpe15g00323 Bpe-Chr15:14770096 3.04E-164 dispersed
Bpe15g00323 Bpe-Chr15:14770096 Bpe15g00777 Bpe-Chr15:18066406 7.38E-130 dispersed
Bpe08g00549 Bpe-Chr8:3812767 Bpe15g00323 Bpe-Chr15:14770096 4.42E-75 transposed
Bpe15g00323 Bpe-Chr15:14770096 Bpe06g00184 Bpe-Chr6:4693361 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1032 . . . . Bpe15g00323 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g00819 . . . . . . . . . . . . . . . . . . . . . .
Vvi7g1018 Blo04g01066 . . Bda10g00245 Bpe06g00184 Bpe15g00323 . . Cmo03g00980 . . . . . Sed14g0867 Cpe19g00637 . Bhi03g00959 Tan03g1572 Cmetu08g0588 . Hepe04g1265 . . . . . . . . . Cone6ag1416 Cone9ag1343 Cone8ag0142 . Lsi01g00958 Csa06g02962 . Cme08g00592 . . . . . . . . . . . Cma03g00959 . Car03g00865 Car07g00685 Cpe10g00449 . . . . . . . . . . . . . . . . . Chy02g00894 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00323 Bpe_Chr15 FPKM 16.756084 16.227581 18.647528 18.522364 12.187578 9.828653 13.973835 6.082858 7.328924 7.196974