Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00335 ATGGCCGACGAGCAGCCTACGATCGCCGGTCGACGGAGGAGTCGCGGCTCCGAGGCATTGGCCCGTGCTGACGCTCTTCAACGCCTAAAAGCCCTAAGAAGCAGTGGCCGACGGTCTGACAATGGCGGAGTGCAAATTAAGGTGGAAAACCCTATTTATGACACTGTTCCTGAGGATGAGTACGACGCACTGGTCGCCAAGCGTCGGGAAGAAGTTAAAGGGTTTATCGTCGACGACGACGGATTTGGGTACTGCGACGAAGGCGAGGAGGAGGATTGGTCCAAAACTGGACTTCCTTTGTCTTCTGATGATTCCGAAGGTGAAAGGGAGAGACCTAAGAAAAAGAAGGTGGAGAAGAAAGAATCGCAGCCTAAAAAACAGTCTTCTTCACTTTCAGCAGCTGCAGCAATGATGGGGAAGCAAAGGCTTTCTTCTATGTTCACTTCATCAATTTTTAAGAAGAGTGGCAGGGATGATAAATCTAAAGGTTTGGTATGCGATACACTCGTGGACGATGTAATTGCAGAGTTTGCACCAGATGAGGAAGATAGAGAAAAACGAAGAAGGGGACAGATGAATTCCATGCAGATTTCGAAGAATTTAGTGCCAATTGCTGGTGTTAAGAGTGACAAACCTTGTGTTCGAACTGTTAATCCGGCATTCAGTCATGAAGTTTCTAAGGCTGTGGATATTGGAGAGTTGAAATGTAGCAAGATTAATACAAATGAAAATTCAGACTTAGTTTTTGTGCAAGGTGACGTGGAAGTCAAGAGAGATGGTGTAAATGAGGAGTTTAAGGAAGATAAAGACTTCATTTCTAAATTCAGAGAGGGCACAACTCAGCATGTGCATGTTTCGCCAACCAAGGAGAGTTTAGTTGAAGAGCAGGATCCGAAAATGATTGAAATAAAAGCAGAACAGGTGGTGAAGGACGGAGCTTATACTTTGAATGCAAAAATTAGAGAAGAAAGTAACCCCGAATTAAGCGCCATTGTTGGATGGCAGGCGGTAAGAAGTCAGCGGAATTGCGACATTGATGGTGTTGCAGAAATCAATAATAGCACATGTTCTGAGGAAAAATGTGAATTAGATCTGGACTCAAATAGCGCGATGCCTTTCTACATAGTCGATGCATATGAGGAATTCTATGGTGCTAACACTGGGAATGTGTATCTTTTCGGAAAGGTCAAATCTGGAGGTATGCATCATAGTTGTTGTGTTGTTGTGAAGAACATGCAGAGATGTGCATATGCAATTCCAAAAGATTTTTTTCTTCGCTCAAATGAGATGATTAAGCTCGAGAAAGATGTGGAAGAGTCTCGACTTTCTCCTGCAGATCTCCGAACAAAACTGCAAGAAGCGACTGCAGGATTAAAGAATGAAGTATCAAAGCATTTGTTAGATCTCAACATCTCATCTTTTAGCATGACTCCTGTTAAGAGGAAGTATGCCTTTGAGCGACATGATATACCTTCAGGAGAAAACTACGTTCTTAAGATCAACTATCCATTCAAGGACAACCCTCTTCCATCAGGTCTAAGAGGAGAATCATTTTCTGCTCTTCTAGGAACTCATTGCAGTGCCTTGGAGCTCTTTCTTGTTAAAAGAAAGATAAAGGGACCATCTTGGTTGTCAGTTTCCAAGTTTTCTAATTGCCCCAGTCCCCAACGGGTAAGCTGGTGCAAATTTGAGGTGACTGTGGACTCTCCAAAAGATATATGTATTTCTTCAAACAGTACAATGGAGATCCCTCCTGTTGTTGTTGCTGCAATAAATTTGAAGACTATCATCAATGAAAAGCAGAATGCTAATGAAATTGTTTCTGCATCTGTCATTTGTTGTCACAAAGTCAAGAAAGATCTTCTTTACATAAGTGCCTGGTACTTGATCTTTCAGATTGACACTCCCATGTTGTCTTCAGAATGGAAGAGACCTGGTATGCTGACACATTTTACAGTTGTTCGAAAGCTTGATGGAGCTATATTTCCAATGGGGTTCTCTAAAGAGGCTACAGATAGAAATTCTAAGGCTGGATATAATGTCTTAATCTCTGAAAGCAATGAAAGGGCTTTGTTAAATCGACTACTGATTGAGCTATACAAATTGGATATCGATGTACTGGTTGGACATAACATTTCAGGGTTTGACCTGGACGTTCTCCTCCATAGAGCTCAGGCTTGCAGAGTTCCAAGCAGCATGTGGTCCAAAATTGGTCGCCTAAAGCGGTCTATGATGCCTAAGCTTGGAAAAGGAACCAACATTTTTGGGTCAGGGGCGAGTCTTGGAATCATGTCTTGCATTGCTGGTCGACTTTTATGTGACACATACTTGTGTTCCCGTGATTTATTGAAAGAGGTTAGTTACTCCCTGACAGAATTGTCTAAGACCCAGCTTAATAAGGAACGCAAGGAGATTACTTCTCATGATATTCCCAGAATGTTCCAGACATCAGAATCTCTAATGCAACTTATTGAATTTGGTGAGACAGATGCATGGCTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTAACACGGCAGCTGACTAATATCAGTGGTAATCTTTGGGGGAAAACTCTACAAGGTGCTAGGGCTCAAAGAGTGGAGTATCTGCTTCTTCATGCATTCCATGCTAAGAAATATATTGTGCCAGACAAAATTTCTTCTCAAAATAAGGATAAGAGTTTGAAAAAAAGGACAAGCAGTGGTATTGAGGAGAGAAACGTGAATCAACTTGACACGGATGACATGAATATCAATTATGATGCTTCACACGATGATGTTGGAAAAGGAAAGAAGGGTCCTTCCTACGCAGGTGGGCTGGTCTTGGAGCCAAAAAAAGGTTTATATGATAAGTATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATAATACAGGAATATAATATTTGCTTCACTACAGTAAATATACCTTCAGATGGGGCTGTTCCTCGTCTTCCATCTACTAAAACTATGGGAGTTCTTCCGGAGCTGTTAAAAAATCTAGTTCAAAGAAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGGTGCGGCAACTAGACATTCAACAGCAAGCTCTAAAGCTCACTGCAAATAGTATGTATGGATGTCTGGGATTTTCTAATTCAAGGTTTTATGCAAAGCCACTTGCAGAGCTTATTACCCTACAAGGAAGGGAGATTCTGCAGAGTACTGTTGATCTTGTTCAGAATAATTTGAACTTGGAGGTAATATATGGTGATACAGATTCCATTATGATTTATAGTGGATTGGACGATATACCACAAGCAAAAGCAATTGCAAGAAAAGTTAACAAGAGATATAAGTGTTTGGAAATTGATCTTGATGGTTTATACAAGAGAATGTTGCTTCTAAAGAAAAAGAAGTATGCAGCTGTAAAGATGCAGTTCAAGGATGGAATACCATATGAGGTTATCGAACGGAAGGGCCTTGATATAGTTCGCCGGGACTGGAGCTTACTATCAAAGGAATTAGGAGATTTTTGTTTAAGTCAAATATTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCGATTCACAACTCTCTTTTGAAGATACAAGAAGATATGAGGGACGGGCAAGTACCGCTTGATAAATATATCATCACAAAGACAATGACTAAGCCACCTGAAGCATACCCAGATGCCAAAAATCAACCCCACGTTCAAGTGGCACAAAGGTTGAAGCAAATGGGGTATTCTACTGGTTTTTCTGTAGGTGACACCATTCCTTACATAATCTGTCGTCAGCAGGGATCCTCTTCTGATAGTTCTACAGGAATTGCACAACGTGCTCGTCATCCCGAGGAGTTGAAAAGAGAAGATGGAAAATGGATAATTGACATTGATTACTATCTGTCCCAACAGATTCATCCAGTTGTCTCTCGACTTTGTGCTTCAATTCAGGGTACCAGTCCTGAACGCTTAGCTGACTGTTTAGGGCTCGACTCTTCCAAGGTAAAATTTTCATTTTTAAGCCGTGTCCGTGTTCTGACAATCGTTTCAATCACTTGTAGATATCGGGGTTGCAAACCTCTGACATTGTCATGTCCAAGCTGTTCGATTACATTTGATTGCCCGACTATCTTTAGCACAATTTGTACATCAGTCAGTGAAAAGAGTAAGTCTAATGTGGACGAATCGACCACGAGTTTTTGGAGCAAATTGCATTGTCCTAAATGCCCAGAAGATAGCAATGTGGGTAGAATCTCTCCTGGCATGCTTGCCAATCAGGTTAAAAGGCAAGCAGTGTGGTTCATTTCAATGTATTACAAAGGCGTGATGATGTGTGATGAAGAGACTTGCAAGTGCACCACTCGCTCTCTCAATCTCCGTCTTATTGGTGGTGCTGAGAAAGGAACTGTATGCCCTAATTATCCACACTGCAAAGGTCGTCTTGTGAGAAAGTACTCGGCTAAGGATCTATACAAGCAAGTTTTATATTTCTGCCTTGTATTGGATACTGTACGATGTATAGAAAAGGTGGAAATCAGCACCAGAATGACATTAGAGAAAAAATTGGCCAAAATTCGACCTATGGTTGATTTAGCAGCATCTACCATTCATCGAATTCGAGATCAGAATGCATATGGTTGGGTACAGTTACAGGATATTGCCGTCACAATTTGA 4674 41.23 MADEQPTIAGRRRSRGSEALARADALQRLKALRSSGRRSDNGGVQIKVENPIYDTVPEDEYDALVAKRREEVKGFIVDDDGFGYCDEGEEEDWSKTGLPLSSDDSEGERERPKKKKVEKKESQPKKQSSSLSAAAAMMGKQRLSSMFTSSIFKKSGRDDKSKGLVCDTLVDDVIAEFAPDEEDREKRRRGQMNSMQISKNLVPIAGVKSDKPCVRTVNPAFSHEVSKAVDIGELKCSKINTNENSDLVFVQGDVEVKRDGVNEEFKEDKDFISKFREGTTQHVHVSPTKESLVEEQDPKMIEIKAEQVVKDGAYTLNAKIREESNPELSAIVGWQAVRSQRNCDIDGVAEINNSTCSEEKCELDLDSNSAMPFYIVDAYEEFYGANTGNVYLFGKVKSGGMHHSCCVVVKNMQRCAYAIPKDFFLRSNEMIKLEKDVEESRLSPADLRTKLQEATAGLKNEVSKHLLDLNISSFSMTPVKRKYAFERHDIPSGENYVLKINYPFKDNPLPSGLRGESFSALLGTHCSALELFLVKRKIKGPSWLSVSKFSNCPSPQRVSWCKFEVTVDSPKDICISSNSTMEIPPVVVAAINLKTIINEKQNANEIVSASVICCHKVKKDLLYISAWYLIFQIDTPMLSSEWKRPGMLTHFTVVRKLDGAIFPMGFSKEATDRNSKAGYNVLISESNERALLNRLLIELYKLDIDVLVGHNISGFDLDVLLHRAQACRVPSSMWSKIGRLKRSMMPKLGKGTNIFGSGASLGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELSKTQLNKERKEITSHDIPRMFQTSESLMQLIEFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKISSQNKDKSLKKRTSSGIEERNVNQLDTDDMNINYDASHDDVGKGKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVNIPSDGAVPRLPSTKTMGVLPELLKNLVQRRRMVKSWMKNASGLKVRQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIPQAKAIARKVNKRYKCLEIDLDGLYKRMLLLKKKKYAAVKMQFKDGIPYEVIERKGLDIVRRDWSLLSKELGDFCLSQILSGGSCEDVVESIHNSLLKIQEDMRDGQVPLDKYIITKTMTKPPEAYPDAKNQPHVQVAQRLKQMGYSTGFSVGDTIPYIICRQQGSSSDSSTGIAQRARHPEELKREDGKWIIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKVKFSFLSRVRVLTIVSITCRYRGCKPLTLSCPSCSITFDCPTIFSTICTSVSEKSKSNVDESTTSFWSKLHCPKCPEDSNVGRISPGMLANQVKRQAVWFISMYYKGVMMCDEETCKCTTRSLNLRLIGGAEKGTVCPNYPHCKGRLVRKYSAKDLYKQVLYFCLVLDTVRCIEKVEISTRMTLEKKLAKIRPMVDLAASTIHRIRDQNAYGWVQLQDIAVTI 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14870019 14881554 - Bpe001273.1 Bpe15g00335 116014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00335 1557 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1555 - -
Bpe15g00335 1557 MobiDBLite consensus disorder prediction 1 20 - -
Bpe15g00335 1557 Pfam DNA Polymerase alpha zinc finger 1352 1553 IPR015088 GO:0003887|GO:0006260
Bpe15g00335 1557 ProSitePatterns DNA polymerase family B signature. 1087 1095 IPR017964 GO:0000166|GO:0003676
Bpe15g00335 1557 MobiDBLite consensus disorder prediction 78 137 - -
Bpe15g00335 1557 Pfam DNA polymerase family B 857 1315 IPR006134 GO:0000166|GO:0003677
Bpe15g00335 1557 PRINTS DNA-directed DNA-polymerase family B signature 1032 1044 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe15g00335 1557 PRINTS DNA-directed DNA-polymerase family B signature 1085 1093 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe15g00335 1557 PRINTS DNA-directed DNA-polymerase family B signature 956 969 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe15g00335 1557 TIGRFAM pol2: DNA polymerase (pol2) 51 1313 - -
Bpe15g00335 1557 SUPERFAMILY Ribonuclease H-like 372 886 IPR012337 -
Bpe15g00335 1557 Gene3D - 373 572 - -
Bpe15g00335 1557 Pfam DNA polymerase family B, exonuclease domain 402 792 IPR006133 -
Bpe15g00335 1557 MobiDBLite consensus disorder prediction 1 19 - -
Bpe15g00335 1557 MobiDBLite consensus disorder prediction 88 125 - -
Bpe15g00335 1557 SUPERFAMILY DNA/RNA polymerases 882 1331 IPR043502 -
Bpe15g00335 1557 Gene3D - 1159 1341 IPR042087 -
Bpe15g00335 1557 Gene3D Helix hairpin bin 995 1046 - -
Bpe15g00335 1557 Gene3D Palm domain of DNA polymerase 926 1146 IPR023211 -
Bpe15g00335 1557 SMART polmehr3 584 1099 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe15g00335 1557 CDD DNA_polB_alpha_exo 584 849 - -
Bpe15g00335 1557 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Bpe15g00335 1557 Gene3D - 584 913 IPR036397 GO:0003676
Bpe15g00335 1557 CDD POLBc_alpha 932 1331 IPR045846 GO:0003887|GO:1902975
Bpe15g00335 1557 Gene3D - 413 539 - -
Bpe15g00335 1557 Gene3D DNA Polymerase alpha, zinc finger 1350 1542 IPR038256 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00594 Bpe-Chr9:14671232 Bpe15g00335 Bpe-Chr15:14870019 3.07E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00335 K02320 - jre:109009092 2185.61