Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00346 ATGTCATCGTCGAATTCTCCGTGCGCGGCCTGCAAGGTACGGAGGTGTAAATGTACGCAAGAGTGTGTATTCGCACCGTATTTTCCACCAGATCAGCCTCAGAAATTCGCAAATGTCCACAACGTGTTCGGCGCAAGCAACGTGGCCAAGCTGCTCAACGAACTCGACGCTAGGCACCGGGAAGACGCAGTCAACTCTCTGGCTTACGAGGCCGAGTTTCGCCTCCGAGACCCAGTCTACGGTTGCGTCGGTCTGATCTCCCTCCTTCAGCACAGACTGAAGCAAACGCAAAGCGATCTCATCAACGCCAAAAAAGAGCTCGCCAACTACATTGGGCCTCAGGCAATGCTTCCTGTAATGCAACCTTCAGGGATGATGATGGCGCAACAACAACAACAACAACATCCAGGCAATCCTTCGTCTTCCTACATGATGCCTTATAACATGCAGCCCATGATGAGTATCCCGGCTGGTCCTTCCGGGCAAATGATGATTCGTGAGCCTCACCAACAACAGCAGCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGACCGCAGCCGTAACGGCTAGAGAGCAGCAAGATATGTTTAGTGCTTTCGAGCCAAAAGAACAACAAATGGACCCCCGCCATCATCATCCCCAACAGCAGCAGCAAGAGCTTTTACGGTTACATAATGGGTTCGACCCATCTCCTGTATCCGCCAGTGGGTTTAATCAGCTGAACAACGCTTCTGCTTTGTCCCCTTCTTTGGCTCTCGGCACTTTCGATAATGCATACCACCTTCAACCAGAGATTTCAGAACATCCTCATTCCCATTATCATCATCAACAGCAGCAACAGCTTCAGGCTCAGCCTTTTCTCCAACCACAGCAGCAGCCACAACCACCTACCCAATCCCAGCTTTTGCAGAAGCAAAAGGCAGATAGCGAGGACGACAGAATCATGGGTCCCTCTGGTTAG 975 51.08 MSSSNSPCAACKVRRCKCTQECVFAPYFPPDQPQKFANVHNVFGASNVAKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHRLKQTQSDLINAKKELANYIGPQAMLPVMQPSGMMMAQQQQQQHPGNPSSSYMMPYNMQPMMSIPAGPSGQMMIREPHQQQQQHQLHQQQLFEAQQLTAAVTAREQQDMFSAFEPKEQQMDPRHHHPQQQQQELLRLHNGFDPSPVSASGFNQLNNASALSPSLALGTFDNAYHLQPEISEHPHSHYHHQQQQQLQAQPFLQPQQQPQPPTQSQLLQKQKADSEDDRIMGPSG 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15008398 15009372 + Bpe001285.1 Bpe15g00346 116025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00346 324 MobiDBLite consensus disorder prediction 274 324 - -
Bpe15g00346 324 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Bpe15g00346 324 MobiDBLite consensus disorder prediction 280 309 - -
Bpe15g00346 324 Coils Coil 86 106 - -
Bpe15g00346 324 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Bpe15g00346 324 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 310 - -
Bpe15g00346 324 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00045 Bpe-Chr14:687932 Bpe15g00346 Bpe-Chr15:15008398 7.36E-55 dispersed
Bpe15g00346 Bpe-Chr15:15008398 Bpe11g01519 Bpe-Chr11:11281461 5.97E-45 dispersed
Bpe13g00079 Bpe-Chr13:4520189 Bpe15g00346 Bpe-Chr15:15008398 4.41E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22561 PF03195 LOB 1.20E-38 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00346 - - jre:109018950 332.028