Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00395 ATGCTGGAAATTCCAAGTTTACCGGGAAATCCAGACGTGTCAACGGAGAATGGGGAAGACAGTGTGTTTGGCGAGGATGAGAGAATCGGAATCGGAAACCGGTGGCCTCGTCAAGAGACTTTGATTTTGTTGAAGATAAGGTCGGAAATGGATTCGGCTTTTAGAGACGCCAATCTTAAAGGTCCGCTATGGGAAGAAGTTTCCAGGAAACTATTGGAACTAGGATTTAATAGGAGTGCTAAGAAATGCAAGGAGAAGTTTGAAAACATCTACAAATACCACAAAAGAACCAAGGAAGGCCGATCGGCCCGGCAAAATGGGAAGATGTATCGGTTTTTTGAGCAATTAGAAGCTCTAGACACCCTTCCGATGCATCCATACCCTTCTTCGACGGAAAAAATCCAAACTCCGGTTTCAGAAATCCCACGGATATGCAACACTACAATTGTCCACAACGCAATTCCGTGTTCTATGATAAACCCAAACTCAAATTTCATCGACTCATCGAGTTCTACTCCAACTACATCAAGTTCAAGCAAGGATTCAGAGAGAAGGCAGAAGAAGAAGAGAAAGTTTGAGGAGTACTTTGAGAAGTTGATGAAGGAAGTGATCGAAAAGCAAGAGAATTTGCAGAGGAAGTTCTTAGAAGTTTTGGACAAATGTGAACAAGAAAGGATAGCTAGAGAAGAAGCATGGAAAGTTCAGGAACTGGCTCGGATAAAGCGAGAGAGGGAGCTTCTTGTCCAAGAGCGATCAATTGCGGCTGCAAAGGATGCAGCTGTGCTTGCTTTCCTACAAAAATATGCCGACCACTTGGGGCCAGTGCAATTGCCGGAAAACATAACTCCGTGGGAGAATGTCTCAGAGAAGCAAAATGATAGTAACGGCGTAAAAGTTGTGGATAGTCGAGAAAACAGCAACGGCGGGAATTCAATCCACGTGAGCTCTTCTCGTTGGCCGAAAGATGAAGTGGAGGCCTTAATCCAGATCAGGAGTAACCTCGACATGCAGTGTGTCGAAAATGGACAAAAAGGCTCGCTCTGGGAAGAAATCTCATTGGCTATGAAGAAACTTGGGTATGATAGGAATGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTTAAGAGGGTGAAAGAAAGCAATAAGAGGAGGCCGGAAGATTCGAAGACTTGTCCGTATTTTCACCAGCTCGATGCGTTGTACAAAGAGAAGACGAAGAAGCTGGATAGCTCAAGAAACTCACGATATGAGTTGAAACCAGAGGAGCTCTTAATGCACATGGTGGACGGGGAAGAACCGCCCCTCCAATTTGAATCTGCCGTGGACGTTGGCGAAGGCAAAAAACTCGATCAAAATCAACGAGATCATGAAAATAACGACGACGAAGATGACGATGAAGACGGTGACTATCAGCTTGTAGCTCACGATAATCCAATGGAAGTAATGAGCTAA 1464 44.33 MLEIPSLPGNPDVSTENGEDSVFGEDERIGIGNRWPRQETLILLKIRSEMDSAFRDANLKGPLWEEVSRKLLELGFNRSAKKCKEKFENIYKYHKRTKEGRSARQNGKMYRFFEQLEALDTLPMHPYPSSTEKIQTPVSEIPRICNTTIVHNAIPCSMINPNSNFIDSSSSTPTTSSSSKDSERRQKKKRKFEEYFEKLMKEVIEKQENLQRKFLEVLDKCEQERIAREEAWKVQELARIKRERELLVQERSIAAAKDAAVLAFLQKYADHLGPVQLPENITPWENVSEKQNDSNGVKVVDSRENSNGGNSIHVSSSRWPKDEVEALIQIRSNLDMQCVENGQKGSLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVKESNKRRPEDSKTCPYFHQLDALYKEKTKKLDSSRNSRYELKPEELLMHMVDGEEPPLQFESAVDVGEGKKLDQNQRDHENNDDEDDDEDGDYQLVAHDNPMEVMS 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15458834 15460610 - Bpe001332.1 Bpe15g00395 116074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00395 487 MobiDBLite consensus disorder prediction 437 487 - -
Bpe15g00395 487 Gene3D - 35 96 - -
Bpe15g00395 487 Gene3D - 319 380 - -
Bpe15g00395 487 CDD GT1 317 382 - -
Bpe15g00395 487 ProSiteProfiles Myb-like domain profile. 33 91 IPR001005 -
Bpe15g00395 487 CDD GT1 33 98 - -
Bpe15g00395 487 MobiDBLite consensus disorder prediction 1 23 - -
Bpe15g00395 487 Coils Coil 204 224 - -
Bpe15g00395 487 ProSiteProfiles Myb-like domain profile. 311 375 IPR001005 -
Bpe15g00395 487 Pfam Myb/SANT-like DNA-binding domain 317 404 IPR044822 -
Bpe15g00395 487 Pfam Myb/SANT-like DNA-binding domain 33 119 IPR044822 -
Bpe15g00395 487 MobiDBLite consensus disorder prediction 164 179 - -
Bpe15g00395 487 PANTHER - 16 480 - -
Bpe15g00395 487 SMART sant 315 377 IPR001005 -
Bpe15g00395 487 SMART sant 31 93 IPR001005 -
Bpe15g00395 487 MobiDBLite consensus disorder prediction 164 187 - -
Bpe15g00395 487 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 16 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00395 - - - csv:101215942 563.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00754 Bpe-Chr2:5274443 Bpe15g00395 Bpe-Chr15:15458834 2.91E-20 dispersed
Bpe03g01248 Bpe-Chr3:31112451 Bpe15g00395 Bpe-Chr15:15458834 1.79E-56 dispersed
Bpe04g00352 Bpe-Chr4:2233294 Bpe15g00395 Bpe-Chr15:15458834 1.21E-112 dispersed
Bpe11g01338 Bpe-Chr11:9994445 Bpe15g00395 Bpe-Chr15:15458834 2.56E-14 dispersed
Bpe15g00395 Bpe-Chr15:15458834 Bpe11g01534 Bpe-Chr11:11434580 1.43E-07 dispersed
Bpe15g00395 Bpe-Chr15:15458834 Bpe04g00350 Bpe-Chr4:2226258 8.69E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22567 PF13837 Myb_DNA-bind_4 1.10E-21 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00395 Bpe_Chr15 FPKM 30.084999 31.011881 2.458593 2.458281 0.0 0.0 0.0 0.238028 0.302582 0.523911