Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00398 ATGGGTTTTGCTGAATTTGCTTCTTCAAAGGCTCTTGTGCAAGATGTTAGAATTAATGGATTGGAGAGGCTTACAGAGCTCAGTGGAGCTGTTCAAAGCTCAGACATTTATAATGGTCAAGCAAATGAGAAGGCAGAAGATAATCAAGAAAACAGCTCAGATGAAGAAATACTCAACAGGGAAGAAACAAGGGGATGTGTAAAATATGTGACTGTGGCTGATACAAAAGAATGTGAGAATTTTGATGTTGGAAAAAAGAGAATTAAGCGATGGTGGAAAGTCTTCGTAAATCATACGAAAGAAAGAACGAAATCTGTTTCATCACAGTCCAAAACAATCAACGAAAACTCAAAAAAGGGTCGTGTTAAGGTGAGGCAGAAAAAAACAAAATTCGCAGAACTCACTGCTTTATATGTTAGACAAGAGTTTCAAGCTCATGAAGGCTTCGTTTGGGGAATGAAGTTTAGCCTGGATGGTCGATATTTAGCCAGTGGAGGTGAAGATGGAGTTGTTCGAATTTGGCGGGTTAAACTCGTTGATTGTTCGAGCTGTTCTTTACGCAGCGAAGGCGGCTTTGATGACATATTGAGGGAAGGGAATAATTTTCTTGCAAAGCCCTCAGGTCGGGATGCTCTTCTTCTTCCAAAGAAGCTTTTTCAGATCGAAGAGTCACCAATGCAAGAATTTCATGGCCATTCCAGTGATGTTTTAGACCTTGCATGGTCAAATTCCAACTGCCTTCTCTCTTCTTCCATGGATAAAACCGTTCGGCTATGGCAAGTTGGCTGCGACAGATGTCTAAACGTTTTCCATCACCCGAATTATGTGACTTGCATCCAATTCAATCCTGTCGATGAGAATTATTTTATAAGTGGTTCTGTAGACGGGAAAGTTAGGATCTGGGGCGTGGCTGAAAAACGAGTCATAGACTGGGCAGAGGTCCGAGACGTAATTACTGCAATATCTTACCAACCAAATGGCAAAGGATTCGTAGTTGGCTCAGTCTTCGGCACATGCTCTTTCTTTGAAGCCTCAGGTGAACATTGCCGGCTGGATGCTCAAATACACATAGAAGGCAGAAAGAAAGCGTTGGGAAAAAGAATCACCGGAATACAGTTTTCTCGCGAAAATTTCCAGAGGGTGATGATAACATCCGAAGATTCAAAACTGCGCATATACGACTTCAATGGCCTCAAAATGGTTCAGAAATACAAAGCAGGTCTTCAAAAGTCAGGCAGTCAAATGTCTGCCTCATTTACATCTAGTGGGAAACACATAGTCTCCGTTGGAGAAGATTCCCGGGTTTACTTCTGGAACTACAACGGAAACTCCCACCTTTCGCCGAAAGAACCGAAATCCATTCAATCTTATGAGAATTTCTTGTCCAAAGGAGTGTCTGTTGCCGTTCCATGGCCAGGCTTGGGAACAGGAAAGAGTGGAATGGATAGCTTCCAGAACCTACCAGAGATTCTGTCTAGCCCGAGAGATTCCGAAGGATTCTTTTTCGGTAGTTGGTTCAACGCTGACAAAGCCTCGGTGACTTGGCCCGAAGAGAAACTTACTATCCAATATATGCCTTTCTTGGGTGCGAACGGAAGTCTTGTTGCTCCGGAAACTTGGGGCCTCGTGATCGTGACAGCCGGTTTCGATGGAATTATGAGGACCTTTCACAACTATGGACTGCCAATTCGAATTTAG 1698 43.23 MGFAEFASSKALVQDVRINGLERLTELSGAVQSSDIYNGQANEKAEDNQENSSDEEILNREETRGCVKYVTVADTKECENFDVGKKRIKRWWKVFVNHTKERTKSVSSQSKTINENSKKGRVKVRQKKTKFAELTALYVRQEFQAHEGFVWGMKFSLDGRYLASGGEDGVVRIWRVKLVDCSSCSLRSEGGFDDILREGNNFLAKPSGRDALLLPKKLFQIEESPMQEFHGHSSDVLDLAWSNSNCLLSSSMDKTVRLWQVGCDRCLNVFHHPNYVTCIQFNPVDENYFISGSVDGKVRIWGVAEKRVIDWAEVRDVITAISYQPNGKGFVVGSVFGTCSFFEASGEHCRLDAQIHIEGRKKALGKRITGIQFSRENFQRVMITSEDSKLRIYDFNGLKMVQKYKAGLQKSGSQMSASFTSSGKHIVSVGEDSRVYFWNYNGNSHLSPKEPKSIQSYENFLSKGVSVAVPWPGLGTGKSGMDSFQNLPEILSSPRDSEGFFFGSWFNADKASVTWPEEKLTIQYMPFLGANGSLVAPETWGLVIVTAGFDGIMRTFHNYGLPIRI 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15503646 15506225 + Bpe001335.1 Bpe15g00398 116077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00398 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 261 - -
Bpe15g00398 565 SMART WD40_4 397 439 IPR001680 GO:0005515
Bpe15g00398 565 SMART WD40_4 263 302 IPR001680 GO:0005515
Bpe15g00398 565 SMART WD40_4 136 175 IPR001680 GO:0005515
Bpe15g00398 565 SMART WD40_4 354 394 IPR001680 GO:0005515
Bpe15g00398 565 SMART WD40_4 222 260 IPR001680 GO:0005515
Bpe15g00398 565 SMART WD40_4 304 343 IPR001680 GO:0005515
Bpe15g00398 565 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Bpe15g00398 565 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Bpe15g00398 565 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Bpe15g00398 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Bpe15g00398 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Bpe15g00398 565 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 43 565 - -
Bpe15g00398 565 Gene3D - 125 460 IPR015943 GO:0005515
Bpe15g00398 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 177 - -
Bpe15g00398 565 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Bpe15g00398 565 Pfam WD domain, G-beta repeat 265 301 IPR001680 GO:0005515
Bpe15g00398 565 Pfam WD domain, G-beta repeat 224 259 IPR001680 GO:0005515
Bpe15g00398 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 261 IPR001680 GO:0005515
Bpe15g00398 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 177 IPR001680 GO:0005515
Bpe15g00398 565 MobiDBLite consensus disorder prediction 38 57 - -
Bpe15g00398 565 PANTHER WD REPEAT DOMAIN 44 43 565 IPR040324 -
Bpe15g00398 565 SUPERFAMILY WD40 repeat-like 137 442 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00398 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - zju:107427210 595.119
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00273 Bpe15g00398 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00398 Bpe-Chr15:15503646 Bpe06g00115 Bpe-Chr6:1804140 1.10E-29 dispersed
Bpe11g00491 Bpe-Chr11:3780889 Bpe15g00398 Bpe-Chr15:15503646 3.09E-97 transposed
Bpe13g00025 Bpe-Chr13:551870 Bpe15g00398 Bpe-Chr15:15503646 0 transposed
Bpe15g00398 Bpe-Chr15:15503646 Bpe06g00273 Bpe-Chr6:13662358 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00398 Bpe_Chr15 FPKM 9.039083 10.606511 6.162906 6.921854 22.649258 17.030544 23.134012 3.61618 3.112029 2.780687