Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00400 CCTGTCCCGGAGATGGCTCCTTCCACTTTTTCGCCGGCTGCGGCGGCGGATCGGATTATCCACTACAGTCGTTCATTCTACCGGACGAAGGATCCTCGCAGTCATATTTCTCTGTATCCGCCGCCGAAGAAGGTGAAGCCAATGTCTGAGATAATGGCCACGGCTAAATTTGCGGTGGTGGATCGAGGAGATTATAGCGATGTGCGGTGCGAGCAATGCCGGTCCGGCGATAGAGCGGAGGAGCTGCTTCTGTGTGACAAATGCGATAAAGGGTTTCATATGAAATGTGTTAGGCCGATCGTCGTTAGGGTCCCGATTGGATCATGGCTTTGCCCCAAATGCTTTGGACAACGTCGAGGAAGACGTTTGTCTCAAAAGAAGATCATTGATTTCTTTAGAATTGAGAAATGTAAAGAACCAAAAGACAATAGTCCAATACAAGATTCAAGAAAGCGTCGTAGACGATCAGGATCACTTAGATTGCAAAAGAAGAGGAGGAGATTGTTACCATATACTCCAACTGAAGATCCTGGTCGAAGACTGAAGCAGATGGCTTCGCTAGCCTTTGCCTTAACCACATTGCAAATGAATTTCAGCGATGACCTTACTTACCTGCTCGATATGGCTCCTAGATCTGCCAATCAAGCCAAATTAGAAAATGGTGGCATGCAGGTTCTATCCAAGAAAGATTGCGAGACATGGAAACTTTGTCGAGAAATGAGCAAAAGTGGTGAATGCCCTCCGCTTTTCGTTGTTTATGATCCATATGAGGGTTTTACAGTGAAGGCTGATGGTCTGATAAAGGATCTAACTTTCATTGCTGAATATACCGGTGATGTGGATTACCTGAAAAACAGAGAACATGATGACTGCGATAGTATGATGACTCTTCTTTCTGCAAAAGATCCATCTAATAGCCTTGTCATTTGCCCTGACAAACGTGGGAATATTGTTCGGTTCATCAATGGGATAAATAATCATACTCCGGAAGGTAAGAGGAAGCAAAATTGTAAATGCGTGAGATACAATGTTAATGGTGAATGTCGGGTCTTTTTGGTCGCTACTCGTGATATCGATGAGGGAGAGAGGCTATATTACGACTATAATGGATATGAGCATGAATATCCGACTCACCATTTTGTTTAA 1146 44.24 PVPEMAPSTFSPAAAADRIIHYSRSFYRTKDPRSHISLYPPPKKVKPMSEIMATAKFAVVDRGDYSDVRCEQCRSGDRAEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCFGQRRGRRLSQKKIIDFFRIEKCKEPKDNSPIQDSRKRRRRSGSLRLQKKRRRLLPYTPTEDPGRRLKQMASLAFALTTLQMNFSDDLTYLLDMAPRSANQAKLENGGMQVLSKKDCETWKLCREMSKSGECPPLFVVYDPYEGFTVKADGLIKDLTFIAEYTGDVDYLKNREHDDCDSMMTLLSAKDPSNSLVICPDKRGNIVRFINGINNHTPEGKRKQNCKCVRYNVNGECRVFLVATRDIDEGERLYYDYNGYEHEYPTHHFV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15512866 15516307 + Bpe001337.1 Bpe15g00400 116079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00400 381 SUPERFAMILY FYVE/PHD zinc finger 60 121 IPR011011 -
Bpe15g00400 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 131 IPR013083 -
Bpe15g00400 381 CDD SET_ATXR5_6-like 244 381 - -
Bpe15g00400 381 ProSiteProfiles SET domain profile. 247 369 IPR001214 GO:0005515
Bpe15g00400 381 Gene3D SET domain 152 381 IPR046341 -
Bpe15g00400 381 SMART PHD_3 69 115 IPR001965 -
Bpe15g00400 381 PANTHER HISTONE ACETYLTRANSFERASE 13 379 - -
Bpe15g00400 381 Pfam SET domain 293 369 IPR001214 GO:0005515
Bpe15g00400 381 Pfam PHD-finger 69 114 IPR019787 -
Bpe15g00400 381 ProSitePatterns Zinc finger PHD-type signature. 70 114 IPR019786 -
Bpe15g00400 381 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 13 379 - -
Bpe15g00400 381 SUPERFAMILY SET domain 231 369 IPR046341 -
Bpe15g00400 381 ProSiteProfiles Zinc finger PHD-type profile. 67 117 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00400 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - jre:108990487 550.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00149 Bpe-Chr9:1017606 Bpe15g00400 Bpe-Chr15:15512866 9.17E-07 dispersed
Bpe12g00344 Bpe-Chr12:8516957 Bpe15g00400 Bpe-Chr15:15512866 2.13E-143 dispersed
Bpe15g00400 Bpe-Chr15:15512866 Bpe01g00458 Bpe-Chr1:2786359 7.15E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1273 Blo04g00967 . . . Bpe15g00400 . . . Cmo02g00627 Cmo20g01075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01056 . . Bma03g01031 . . . . . Cma20g01067 . . Cpe05g01065 Cpe16g00078 Bhi10g01661 . . . . . . Cla02g00064 Cam02g0065 Cec02g0067 Cco02g0060 Clacu02g0064 Cmu02g0064 Cre02g0403 . . . Cme11g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22568 PF00856 SET 4.90E-06 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00400 Bpe_Chr15 FPKM 1.094092 1.237169 0.158112 0.267256 0.549948 0.594101 0.63453 1.964081 2.512307 1.726433