Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00427 ATGGAAGTGGGTTATAATTCACAAAATAGGGAGTCTTCGTCCAAGCTGACTTCTACAGCCTTTGCTCAAACAGTTGAAGAAAAAACAAGCGATGAAACAATTCAACACGGAGAGACAGCTTCCAATCCTCCTCAAACCCTAGACCAGAATTACCTCACTTATCATCTTCATCACCACCATCATTTTCCTCACAGCCGACAATTGAATCCTTCTCCAGAAATTTCCTGCAAATACAGCAAAGATCCACACCCCAACCGGCCAGATCTGGGGCCAGCTCCTACTACTCCACTGCCCGGAAGATTGAACTCGAAAACACCATCGCAACCTGGAGCTTCGACCAGTGTAACTATTTCCTCTCCCGTTCGATATCGAGAATGTTTAAAGAACCATGCGGCGAGTATGGGCGGGTACGTTCTCGATGGATGCGGAGAATTCATGCCAAACGGAGAACAAAACAGTAGAGAAGGTTTGAAATGTGCGGCCTGCGATTGCCATCGTAACTTTCACCGGAAAGAGACCGACGGCGAGCCGCCAGATCCGTCTTCGGCGAACTTTTACTACCCCTACAGCTCGAACAACACCACCACACGAAGGAGCAATCAAAGAATGGTTCCTACACCATCCCATCTCTACCACCAGGGACCACTCTCTCTCGGGCCACCGGCGCTGATGATGATGGCCTTTGGAAGTTCCAGTGGAGCTGCAGCGGAGTCTTCAAGCGAAGATCTAGCTATGGGACATCAACCACAATCATCAAAAAAGCGGTTTCGGACAAAATTCACAAATGAACAGAAAGATAAGATGATGGAGCTCGCTGAAAAACTGGGATGGAAGATTCAGAAGCATGATGAAGAAGAGGTGCAGCAGTTCTGTACAGAAGCGGGCGTAAAGAGGCAGGTTTTCAAGGTATGGATGCATAACAACAAGCCAACCATAAAAAAACATCAAATGTAA 954 47.38 MEVGYNSQNRESSSKLTSTAFAQTVEEKTSDETIQHGETASNPPQTLDQNYLTYHLHHHHHFPHSRQLNPSPEISCKYSKDPHPNRPDLGPAPTTPLPGRLNSKTPSQPGASTSVTISSPVRYRECLKNHAASMGGYVLDGCGEFMPNGEQNSREGLKCAACDCHRNFHRKETDGEPPDPSSANFYYPYSSNNTTTRRSNQRMVPTPSHLYHQGPLSLGPPALMMMAFGSSSGAAAESSSEDLAMGHQPQSSKKRFRTKFTNEQKDKMMELAEKLGWKIQKHDEEEVQQFCTEAGVKRQVFKVWMHNNKPTIKKHQM 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15790946 15791899 - Bpe001363.1 Bpe15g00427 116106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00427 317 MobiDBLite consensus disorder prediction 1 116 - -
Bpe15g00427 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 122 172 IPR006456 -
Bpe15g00427 317 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Bpe15g00427 317 Pfam ZF-HD protein dimerisation region 121 173 IPR006456 -
Bpe15g00427 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 57 315 - -
Bpe15g00427 317 Gene3D - 237 314 - -
Bpe15g00427 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 315 - -
Bpe15g00427 317 MobiDBLite consensus disorder prediction 1 28 - -
Bpe15g00427 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 123 172 IPR006456 -
Bpe15g00427 317 MobiDBLite consensus disorder prediction 98 116 - -
Bpe15g00427 317 MobiDBLite consensus disorder prediction 35 52 - -
Bpe15g00427 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 309 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00427 - - - qsu:111998832 288.885
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00443 Bpe15g00427 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00095 Bpe-Chr6:1408916 Bpe15g00427 Bpe-Chr15:15790946 3.89E-55 dispersed
Bpe13g00293 Bpe-Chr13:10801361 Bpe15g00427 Bpe-Chr15:15790946 3.26E-22 dispersed
Bpe14g00177 Bpe-Chr14:2140419 Bpe15g00427 Bpe-Chr15:15790946 1.30E-49 dispersed
Bpe15g00427 Bpe-Chr15:15790946 Bpe15g00243 Bpe-Chr15:13724554 1.07E-40 dispersed
Bpe02g00132 Bpe-Chr2:905065 Bpe15g00427 Bpe-Chr15:15790946 2.85E-57 transposed
Bpe13g00443 Bpe-Chr13:11967088 Bpe15g00427 Bpe-Chr15:15790946 4.94E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22569 PF04770 ZF-HD_dimer 2.10E-29 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00427 Bpe_Chr15 FPKM 44.463058 51.218258 44.323097 42.900406 47.624165 56.032253 49.300266 61.410271 65.875664 66.775269