Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00434 ATGAAGTGCCCCTACTGCTCGGCGGCTCAGGGACGGTGCGTCACCTCGAGCTCCGGCAGGTCCATTACTGAATGCGCTTCTTGCGGCCGCGTGGTGGAAGAGCGACAATTCCAACCGCATCACCTCTTCCACCTCCGAGCTCAAGACAACCCTCTCTGTTTGGTCACTTCCGACCTTCCTACTCCTCCATCGCATCTCCGATTGGACAACGACGACGATCCTTTCGAGCCGACGGGTTTCATTACCGCCTTTTCTACCTGGTCCCTCGAGCACAACCCCCTCTTCCTCCGCTCTTCCCTCTCCTTCTCCGGTGACCTCGCTGAGCTCGAGCGCGTCCTCGAATCTACGGCCTCTACTTCTACGGTCGTTGTGGATAATCTGCGGGCGTATATGCAAATCATTGATGTGGCTTCGATCTTGGGTTTGGATTATGATATTTCGGATCACGCTTTTCAGTTGTTTAGGGACTGTTGCTCTTCTACTTGCTTGAGGAATCGTAGCGTTGAGGCGCTTGCCACTGCTGCTCTTGTTCAGGCCATTAGGGAGGCCCAGGAGCCAAGAACCCTTCAGGAAATTTCAATTGCAGCCAATGTACCTCAGAAGGAGATTGGGAAGTACATCAAGATACTTGGAGAAGCTCTACAACTAAGTCAGCCCATTAACAGCAATTCGATATCGGTTCATATGCCAAGATTTTGCACGCTGCTTCAACTTAATAAATCTGCTCAGGAACTTGCAACTCACATTGGGGAGGTTGTCATCAACAAATGCTTCTGCACTCGTAGAAACCCGATTAGTATCTCTGCGGCTGCCATATATTTAGCCTGTCAGCTGGAAGACAAACGAAAGACTCAGGCAGAGATTTGCAAGGTTACAGGCCTGACTGAAGTCACATTACGTAAAGTCTACAAGGAGCTGTTGGAAAATTGGGATGACTTAATTCCATCTAATTACACTCCAGCTGTTCCTCCAGAAAGAGCATTTCCCACTACCGTAATTGCATCTTGTCGATCTTCGGCTTCTAAAATTGATTTGGTCGATGCAGTAATTTTGGAGCGAGACAAACAGGCAGAGGTCAAACCCAACAAAGAAAGTGAACTCTGTGATCCAAGTAATCCAGCCGGAGGGAGATACGAAAGTGAAAGTAAAGTTAATTCTCAAGTGCCACATCCAATTTCGTTGACGAGTAGGCCACCGACTTTTTGGCAAACCCATTTTCCTCCATCGACTTCTAGCATTGGAAGAACTGTGTGGGGGAAAAATCATAGTATTCAGGGAATGGAAATTGATGATATTCATTGTGTTAGGAATTCTCAGAAGCCACGAGAATTGCCCAGTCAGAGCTTAGCTAACAGGCCTCAGCCACCGTATCAATCAGAGCCTTCTTCAAACTTGAGAACTGAGGTTCCACAGAAATCTGTGCAAGAATGTGCAGAATACAGAGGACCTGAGAACCAGAATGAAGCTGGAATTGCCAATCGGAGCAGCCATGCCTAG 1497 48.1 MKCPYCSAAQGRCVTSSSGRSITECASCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLPTPPSHLRLDNDDDPFEPTGFITAFSTWSLEHNPLFLRSSLSFSGDLAELERVLESTASTSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCCSSTCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLIPSNYTPAVPPERAFPTTVIASCRSSASKIDLVDAVILERDKQAEVKPNKESELCDPSNPAGGRYESESKVNSQVPHPISLTSRPPTFWQTHFPPSTSSIGRTVWGKNHSIQGMEIDDIHCVRNSQKPRELPSQSLANRPQPPYQSEPSSNLRTEVPQKSVQECAEYRGPENQNEAGIANRSSHA 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15833262 15835664 - Bpe001370.1 Bpe15g00434 116113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00434 498 SUPERFAMILY Cyclin-like 128 218 IPR036915 -
Bpe15g00434 498 Gene3D - 127 218 - -
Bpe15g00434 498 SMART cyclin_7 131 212 IPR013763 -
Bpe15g00434 498 SMART cyclin_7 227 308 IPR013763 -
Bpe15g00434 498 CDD CYCLIN 229 307 IPR013763 -
Bpe15g00434 498 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 PRINTS Transcription initiation factor IIB signature 173 192 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 PRINTS Transcription initiation factor IIB signature 228 246 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 PRINTS Transcription initiation factor IIB signature 199 214 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 PRINTS Transcription initiation factor IIB signature 294 308 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 PRINTS Transcription initiation factor IIB signature 262 278 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 446 - -
Bpe15g00434 498 Gene3D - 227 323 - -
Bpe15g00434 498 MobiDBLite consensus disorder prediction 439 498 - -
Bpe15g00434 498 Pfam Transcription factor TFIIB repeat 227 308 IPR013150 GO:0017025
Bpe15g00434 498 Pfam Transcription factor TFIIB repeat 129 210 IPR013150 GO:0017025
Bpe15g00434 498 MobiDBLite consensus disorder prediction 360 401 - -
Bpe15g00434 498 MobiDBLite consensus disorder prediction 440 471 - -
Bpe15g00434 498 MobiDBLite consensus disorder prediction 378 401 - -
Bpe15g00434 498 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 446 IPR000812 GO:0006352|GO:0070897
Bpe15g00434 498 CDD CYCLIN 129 210 IPR013763 -
Bpe15g00434 498 SUPERFAMILY Cyclin-like 225 323 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00434 K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB - zju:107424838 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01009 Bpe-Chr11:7498003 Bpe15g00434 Bpe-Chr15:15833262 6.75E-20 dispersed
Bpe15g00434 Bpe-Chr15:15833262 Bpe02g01032 Bpe-Chr2:10822512 1.44E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g949 Blo04g00921 . . . Bpe15g00434 . . . . . Cma03g00760 . Car03g00694 . Sed14g1109 . Cpe10g00603 Bhi03g01283 Tan03g1969 Cmetu08g1776 . Hepe04g1500 . . Cla01g01897 Cam01g1987 Cec04g1638 Cco04g1704 Clacu01g2006 Cmu01g1877 Cre04g1558 . . . . Lsi01g00685 . . Cme08g00838 . . . . . . . . . Cmo03g00787 . . . . . . . . . . . . . . . . . . . . . . Csa06g03230 Chy02g00658 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00434 Bpe_Chr15 FPKM 17.062735 17.640665 10.596187 9.694916 21.707148 21.12443 18.256578 15.600688 14.882787 12.6677