Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00449 AGAATGGGTCGTGTAAAGCTACAGATTAAAAGGATTGAAAACAACACAAATCGACAAGTTACCTTCTCCAAACGTAGAAATGGACTCATTAAAAAGGCTTACGAGCTTTCTATCCTCTGTGATATTGACATTGCTCTCATCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCAAAAGAAGAATTGAAGACGTCCTCGCACATTACATAAATCTGGCTGATCACGACCGGGGAGGCGTCATTCAAAATAAGGAGTATTTGTTAAGTACCCTGAACAAACTCAAGACGGAAAATGACATAGCCTTGCAACTAGCCAATCCATCGGCGGTGAACTCAAACGTCGAGGAGCTCCAGCAACAAATAGGCAATTTACAGCATCAGCTCCAAGTATCCGAGGAGCAGCTAAGAATGTTCGAGCCAGAACCCTTATCGTTCACGTCCATAGACGGCCTTGAATCTTGCGAGAAGACCCTTTTGGATGCTTTGACGCGCATTACGCAGAGAAAGAAGGATCTCCTCAGCACCCATTTGTCCTCTTACGATCCATCCATTGTACAGATATACTTGGATACACAAGAAGGAATACCCACGTCCTTTGAAAACGAGCTGGCTACTTGGTTACCAGAAGGCAATCAAAACGCAGCGCACATGTGCGTCCCGTCAGAATCATCTTCCATTCCTCCTCAAACCCAAAGTGTCCAATACTCAAACGCAATCTACGATATTCCATGCAATGTCGGAGGGTGTCATGTCGTGAACGACAACGACGAGAATGGGCTGCCGTCGTGGCACCATAACTACACTACTTCTGAGCTTCTGTCTGCCTTCATTCCTCCTACCTCTTTTGCTTCTCTCAAGGTCAATTCCCATTTCCCACCTTTTGATCTCTTATTCTTAGTCATTGTTTTGGTTAGTAATTAA 927 45.52 RMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGKRRIEDVLAHYINLADHDRGGVIQNKEYLLSTLNKLKTENDIALQLANPSAVNSNVEELQQQIGNLQHQLQVSEEQLRMFEPEPLSFTSIDGLESCEKTLLDALTRITQRKKDLLSTHLSSYDPSIVQIYLDTQEGIPTSFENELATWLPEGNQNAAHMCVPSESSSIPPQTQSVQYSNAIYDIPCNVGGCHVVNDNDENGLPSWHHNYTTSELLSAFIPPTSFASLKVNSHFPPFDLLFLVIVLVSN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15933486 15936772 + Bpe001384.1 Bpe15g00449 116128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00449 308 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Bpe15g00449 308 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Bpe15g00449 308 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 2 292 - -
Bpe15g00449 308 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Bpe15g00449 308 Coils Coil 116 136 - -
Bpe15g00449 308 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 292 - -
Bpe15g00449 308 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00449 - - - qsu:112023587 401.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00449 Bpe-Chr15:15933486 Bpe02g00148 Bpe-Chr2:1012227 2.02E-25 dispersed
Bpe15g00449 Bpe-Chr15:15933486 Bpe11g01646 Bpe-Chr11:12625769 5.07E-30 transposed
Bpe15g00449 Bpe-Chr15:15933486 Bpe10g00879 Bpe-Chr10:14576549 1.03E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22575 PF00319 SRF-TF 9.10E-26 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00449 Bpe_Chr15 FPKM 5.959286 6.934894 10.594019 9.305916 10.893284 9.511001 11.204553 13.241357 13.630655 13.564082