Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00449 AGAATGGGTCGTGTAAAGCTACAGATTAAAAGGATTGAAAACAACACAAATCGACAAGTTACCTTCTCCAAACGTAGAAATGGACTCATTAAAAAGGCTTACGAGCTTTCTATCCTCTGTGATATTGACATTGCTCTCATCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCAAAAGAAGAATTGAAGACGTCCTCGCACATTACATAAATCTGGCTGATCACGACCGGGGAGGCGTCATTCAAAATAAGGAGTATTTGTTAAGTACCCTGAACAAACTCAAGACGGAAAATGACATAGCCTTGCAACTAGCCAATCCATCGGCGGTGAACTCAAACGTCGAGGAGCTCCAGCAACAAATAGGCAATTTACAGCATCAGCTCCAAGTATCCGAGGAGCAGCTAAGAATGTTCGAGCCAGAACCCTTATCGTTCACGTCCATAGACGGCCTTGAATCTTGCGAGAAGACCCTTTTGGATGCTTTGACGCGCATTACGCAGAGAAAGAAGGATCTCCTCAGCACCCATTTGTCCTCTTACGATCCATCCATTGTACAGATATACTTGGATACACAAGAAGGAATACCCACGTCCTTTGAAAACGAGCTGGCTACTTGGTTACCAGAAGGCAATCAAAACGCAGCGCACATGTGCGTCCCGTCAGAATCATCTTCCATTCCTCCTCAAACCCAAAGTGTCCAATACTCAAACGCAATCTACGATATTCCATGCAATGTCGGAGGGTGTCATGTCGTGAACGACAACGACGAGAATGGGCTGCCGTCGTGGCACCATAACTACACTACTTCTGAGCTTCTGTCTGCCTTCATTCCTCCTACCTCTTTTGCTTCTCTCAAGGTCAATTCCCATTTCCCACCTTTTGATCTCTTATTCTTAGTCATTGTTTTGGTTAGTAATTAA 927 45.52 RMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGKRRIEDVLAHYINLADHDRGGVIQNKEYLLSTLNKLKTENDIALQLANPSAVNSNVEELQQQIGNLQHQLQVSEEQLRMFEPEPLSFTSIDGLESCEKTLLDALTRITQRKKDLLSTHLSSYDPSIVQIYLDTQEGIPTSFENELATWLPEGNQNAAHMCVPSESSSIPPQTQSVQYSNAIYDIPCNVGGCHVVNDNDENGLPSWHHNYTTSELLSAFIPPTSFASLKVNSHFPPFDLLFLVIVLVSN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15933486 15936772 + Bpe001384.1 Bpe15g00449 116128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00449 308 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Bpe15g00449 308 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Bpe15g00449 308 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 2 292 - -
Bpe15g00449 308 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Bpe15g00449 308 Coils Coil 116 136 - -
Bpe15g00449 308 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 292 - -
Bpe15g00449 308 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Bpe15g00449 308 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00449 Bpe-Chr15:15933486 Bpe02g00148 Bpe-Chr2:1012227 2.02E-25 dispersed
Bpe15g00449 Bpe-Chr15:15933486 Bpe11g01646 Bpe-Chr11:12625769 5.07E-30 transposed
Bpe15g00449 Bpe-Chr15:15933486 Bpe10g00879 Bpe-Chr10:14576549 1.03E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22575 PF00319 SRF-TF 9.10E-26 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00449 - - qsu:112023587 401.749