Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00473 ATGGCGGAAGAGAGATTGACTGGTGTTGTGCAATGGTTCAATGAATCCAAGGGTTTCGGTTTCATCAAGCCTGACGGAGACGGTCCAGATCTCTTTGTCCATCAGTCTTCGATCCAGTCCGATGGCTACCGCCGGCTTGCCGAGGGCGACCAAGTGGCGTTCCAGGTCGCTCCTGGGGACGATGGAAAGTCTAAAGCTGTAGATGTTGTCGTTATTGATGGATCTGCATTTCAAGGCGACAGGACGGATGGTTATGGTGATGGAAGAGGTAGTCGTGGCGGTGGCTATGGTTTTGGGGGTGGTTGGAGAGGTGGTGACAGGCGGAGCGGAGGTGGAGCTGGCTGCTATAATTGCGGTGATCCAGATCATTTGGCTAGGGATTGCGGTCGTGCTAATAATCGTGGGGGAGTTGGCGGTGGGTGCTATTCTTGTGGGGAGGGTGGTCACTTGGCTAGGGATTGCCCTCGAGGAGGAGGAGGAGGAGGAGGCGTTGGCGGTGGTGGTGGTGGAGCGGGTTCTTGCTACAATTGTGGTGGCTTTGGACACATGGCGAGAGATTGCAATTCCAGAAGCAGTGGAGGTGGAGGTGGAGGTGGAGGCGGAGGTGGAGGTGGTTGCTTTAAGTGCGGGGAATTCGGGCATTTAGCTCGGGATTGCAGCAGCGGAAGCAGCAATTTCGGCAGAAGTGGAAGATTTGGAGGCGGTAGTGGAGGAGGTGGTCGTAGCACCTGCTTCAATTGTGGGAAGGCTGGACACTTTGCGAGAGAGTGTACTGGTGCAAATTAA 786 55.22 MAEERLTGVVQWFNESKGFGFIKPDGDGPDLFVHQSSIQSDGYRRLAEGDQVAFQVAPGDDGKSKAVDVVVIDGSAFQGDRTDGYGDGRGSRGGGYGFGGGWRGGDRRSGGGAGCYNCGDPDHLARDCGRANNRGGVGGGCYSCGEGGHLARDCPRGGGGGGGVGGGGGGAGSCYNCGGFGHMARDCNSRSSGGGGGGGGGGGGGCFKCGEFGHLARDCSSGSSNFGRSGRFGGGSGGGGRSTCFNCGKAGHFARECTGAN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16077605 16078390 + Bpe001407.1 Bpe15g00473 116152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00473 261 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Bpe15g00473 261 ProSiteProfiles Zinc finger CCHC-type profile. 115 128 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 ProSiteProfiles Zinc finger CCHC-type profile. 174 187 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 Gene3D - 1 70 IPR012340 -
Bpe15g00473 261 Pfam Zinc knuckle 205 220 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 Pfam Zinc knuckle 173 188 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 Pfam Zinc knuckle 243 258 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 Pfam Zinc knuckle 140 155 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 Pfam Zinc knuckle 114 128 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Bpe15g00473 261 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 199 - -
Bpe15g00473 261 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Bpe15g00473 261 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Bpe15g00473 261 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Bpe15g00473 261 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 133 259 - -
Bpe15g00473 261 ProSiteProfiles Zinc finger CCHC-type profile. 244 257 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 1 199 - -
Bpe15g00473 261 PANTHER COLD SHOCK DOMAIN PROTEIN 2 133 259 - -
Bpe15g00473 261 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 SMART c2hcfinal6 243 259 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 SMART c2hcfinal6 205 221 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Bpe15g00473 261 PRINTS Eggshell protein signature 159 174 - -
Bpe15g00473 261 PRINTS Eggshell protein signature 190 200 - -
Bpe15g00473 261 PRINTS Eggshell protein signature 99 110 - -
Bpe15g00473 261 PRINTS Eggshell protein signature 235 253 - -
Bpe15g00473 261 SUPERFAMILY Retrovirus zinc finger-like domains 167 222 IPR036875 GO:0003676|GO:0008270
Bpe15g00473 261 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Bpe15g00473 261 SMART csp_8 7 72 IPR011129 GO:0003676
Bpe15g00473 261 SUPERFAMILY Retrovirus zinc finger-like domains 104 157 IPR036875 GO:0003676|GO:0008270
Bpe15g00473 261 Gene3D - 202 229 - -
Bpe15g00473 261 Gene3D - 238 261 - -
Bpe15g00473 261 Gene3D - 169 196 - -
Bpe15g00473 261 Gene3D - 112 163 - -
Bpe15g00473 261 ProSiteProfiles Zinc finger CCHC-type profile. 141 156 IPR001878 GO:0003676|GO:0008270
Bpe15g00473 261 SUPERFAMILY Retrovirus zinc finger-like domains 228 258 IPR036875 GO:0003676|GO:0008270
Bpe15g00473 261 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Bpe15g00473 261 ProSiteProfiles Zinc finger CCHC-type profile. 206 219 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00473 K09250 CNBP; cellular nucleic acid-binding protein - csv:101216334 269.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00413 Bpe15g00473 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00286 Bpe-Chr3:3924281 Bpe15g00473 Bpe-Chr15:16077605 4.25E-06 dispersed
Bpe14g00375 Bpe-Chr14:3550585 Bpe15g00473 Bpe-Chr15:16077605 5.25E-06 dispersed
Bpe15g00473 Bpe-Chr15:16077605 Bpe15g00842 Bpe-Chr15:18449805 6.55E-09 dispersed
Bpe13g00413 Bpe-Chr13:11820036 Bpe15g00473 Bpe-Chr15:16077605 5.74E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22580 PF00313 CSD 6.80E-23 CL0021 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00473 Bpe_Chr15 FPKM 8.023414 8.372431 0.912871 1.473817 3.062606 2.572502 3.743425 1.116313 1.243471 1.004956