Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00476 ATGCGTTTAATTTTGTGGTTCTTTATTCGATTTCATTGTTCTTCCCAACTAGGGTTTTTGTACTGTATCATAATTTGGTTTGTGTCGGGACAGGCAACGATTATCTGCATCGACAATTCAGAATGGATGCGAAATGGTGATTATGCCCCTTCTAGATTTCAAGCTCAAGCCGACGCTGTCAATCTAATTTGTGGAGCGAAGACACAGTCTAATCCGGAGAATACAGTTGGATTGCTGACAATGGCTGGCAAAGGGGTTCGCGTTTTGGTAACTCCAACAAGTGATCTTGGAAAGATTCTGGCATGCATGCATGCTGTTTTAAAATTTGATTTTTTTCCCGTCATTTTCGTCTTGTTAGATCTCATTGCTATGCTCCTTTTCCATCTTCTTCAAAGTTTAGGTTTAGAGACAGGAGGTGAGATGAACCTAGCTGCTGGAATCCAGGTTGCCCAGTTGGCTCTTAAGCATCGTCAGAATAAAAAGCAGCAGCAAAGGATTATCGTCTTTGCTGGAAGTCCTATTAAACATGAAAAAAAGTTGTTGGAGACGATAGGAAGGAAGCTAAAGAAAAACAGTGTGGCACTTGATATTGTTGATTTCGGTGAAGAAGAAGATGGGAAGCCAGAGAAGCTTGAAGCACTTCTTGCAGCAGTCAACAATAATAACACCAGTCACATTGTGCATGTTCCAAGTGGTCCAAATGCTCTTTGTGACGTACTTATTAGTACTCCTATCTTCACTGGAGATGGGGAGGGTGGAAGTGGATTTGCAGCTGCAGCGGCTGCAGCTGCAGCTGGTGGTATATCTGGTTTTGATTTTGGTGTAGATCCGAATTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAGGAGGAAAGGGCAAGGCAAGAAGCAGCTGCTAAAAAGGCTGCAGAGGATGCTGCCAAGCAGGACAAAGGAGGTGAACAGTCATCTGTCTTGCAGGATGCATCCATGACTGAACGTTCTGGTGCTGCAACGTCTGATTTTGAGAGTAAAACTGATTTAACGGATGATGAGAATGCTCTGCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCTGCTTCTAGCCATGAAATTCAGGACACAGACATGTCTGATGTTGTTGCAGATGATCCAGAGTTGGCTCTTGCTCTTCAGTTATCTGTGCAGGATGGTGCAAAAGAATCAGATAGCCAGACAGATATGAGTAAGTTGTTGGCAGACCAGTCCTTTGTGTCTTCTATCCTCGCCTCGCTTCCAGGGGTTGATCCAAATGACCCGTCAGTTAAAGATTTACTTGCTTCCATGCAAAGCCAGTCAGAAGTAAGTTTCTCTGCTTGTTACGGGCTTGGTGAAACGATGAGAATAGTTCTGAACAATATCCGTTTGAGTTATGGTGCCGCTGGGTTATCTTGTAAAATTTCACCTCTTTTTGTTAGTTAA 1452 43.46 MRLILWFFIRFHCSSQLGFLYCIIIWFVSGQATIICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGLLTMAGKGVRVLVTPTSDLGKILACMHAVLKFDFFPVIFVLLDLIAMLLFHLLQSLGLETGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPIKHEKKLLETIGRKLKKNSVALDIVDFGEEEDGKPEKLEALLAAVNNNNTSHIVHVPSGPNALCDVLISTPIFTGDGEGGSGFAAAAAAAAAGGISGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQDKGGEQSSVLQDASMTERSGAATSDFESKTDLTDDENALLQQALAMSMDDPASSHEIQDTDMSDVVADDPELALALQLSVQDGAKESDSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEVSFSACYGLGETMRIVLNNIRLSYGAAGLSCKISPLFVS 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16092662 16095327 + Bpe001410.1 Bpe15g00476 116155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00476 483 Gene3D - 276 365 - -
Bpe15g00476 483 MobiDBLite consensus disorder prediction 316 339 - -
Bpe15g00476 483 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 128 445 - -
Bpe15g00476 483 Pfam Ubiquitin interaction motif 347 362 IPR003903 -
Bpe15g00476 483 Pfam Ubiquitin interaction motif 380 394 IPR003903 -
Bpe15g00476 483 Pfam Ubiquitin interaction motif 280 293 IPR003903 -
Bpe15g00476 483 SMART uim 347 366 IPR003903 -
Bpe15g00476 483 SMART uim 278 297 IPR003903 -
Bpe15g00476 483 SMART uim 379 398 IPR003903 -
Bpe15g00476 483 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 347 366 IPR003903 -
Bpe15g00476 483 MobiDBLite consensus disorder prediction 298 314 - -
Bpe15g00476 483 Pfam von Willebrand factor type A domain 33 107 IPR002035 -
Bpe15g00476 483 SMART VWA_4 30 231 IPR002035 -
Bpe15g00476 483 CDD VWA_26S_proteasome_subunit 31 244 - -
Bpe15g00476 483 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 128 445 - -
Bpe15g00476 483 ProSiteProfiles VWFA domain profile. 32 245 IPR002035 -
Bpe15g00476 483 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 31 105 - -
Bpe15g00476 483 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 31 105 - -
Bpe15g00476 483 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 278 297 IPR003903 -
Bpe15g00476 483 MobiDBLite consensus disorder prediction 298 345 - -
Bpe15g00476 483 SUPERFAMILY vWA-like 32 230 IPR036465 -
Bpe15g00476 483 Coils Coil 288 308 - -
Bpe15g00476 483 Gene3D von Willebrand factor, type A domain 31 242 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00476 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - gmx:100814594 597.045
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00410 Bpe15g00476 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00410 Bpe-Chr13:11803059 Bpe15g00476 Bpe-Chr15:16092662 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00476 Bpe_Chr15 FPKM 0.0 0.0 7.443007 3.127799 0.0 0.0 0.0 0.0 0.31519 0.0