Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00480 ATGGCTGGCCGAGTGACTCAACCGAGGAGACAACTGCATCGCCTGCTGGAACAACAGCCCCGAGCCAGGTGGACGACTTCTCTAACAAAGGTACTTGCAGACTTGATGGTTGAACAAGTTCAGAAAGGGAATAGGCGAAATAATTCTTTTGGCAAGAAAGCATGGAGCTACATGTGTGATGAATTCCATAAGAAAACAGGTTTGAGATGGGACAAGGAGCAACTCAAGAATCGATATGCAGTTTTGAGGAGGCAGTTCGGGATAGTCCAGTCACTTCTTGATCGAAATGACTTCACTTGGGACGAAACAAGAGGGATTGTTGTAGCTGACGAGGAATTATGGATTCAGTACATCAAGGGTCACCCAGATGCTGAATCTATAAAGTCAAGTGGCTGCCCAATTTACAAAGAGCTATGCATAATATTTGCAGAACCCAAGTCGAACGGGAAGCTCAATCAATCAAACGAAAATTTGATGGGAACCCATTTCTCAAATTCTTGCGCAGAGCAATTGAGCATGAACGAAGAAGATTCCTCGTCAGAATCAGATGAACTGGACGATTATGAGCAAGAGACAACTCAGCCTGCCACACCAAGCATGGCTGGTAGCAGGAAAAGAGGGCGGAAGGGGGTTGACGAGGCTATCGCCGGAGCCATGTTGGAGATGGCAGCTGCTTCGAGGCTAAGAACGGCTGCTGTGCAGCAACGGGAGTCGAGATATACAATAGCAGATTGTATTAAAGAATTGGATGAGATGATTGGAGTTGAAGAACGAGTCTATTTTATTGCACTGGATCTTTTCATTAAACCTGTTGCCCGAGAGACATTTTTGTCTCTAAAGGGCGACAAACGCTTAATATGGTTGCTCAGAAAATGTACTGCTCTATCGTCGAAATAA 897 45.26 MAGRVTQPRRQLHRLLEQQPRARWTTSLTKVLADLMVEQVQKGNRRNNSFGKKAWSYMCDEFHKKTGLRWDKEQLKNRYAVLRRQFGIVQSLLDRNDFTWDETRGIVVADEELWIQYIKGHPDAESIKSSGCPIYKELCIIFAEPKSNGKLNQSNENLMGTHFSNSCAEQLSMNEEDSSSESDELDDYEQETTQPATPSMAGSRKRGRKGVDEAIAGAMLEMAAASRLRTAAVQQRESRYTIADCIKELDEMIGVEERVYFIALDLFIKPVARETFLSLKGDKRLIWLLRKCTALSSK 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16121488 16122501 - Bpe001414.2 Bpe15g00480 116159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00480 298 MobiDBLite consensus disorder prediction 176 190 - -
Bpe15g00480 298 PANTHER L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN-LIKE 1 297 - -
Bpe15g00480 298 Pfam Myb/SANT-like DNA-binding domain 23 117 IPR024752 -
Bpe15g00480 298 MobiDBLite consensus disorder prediction 169 208 - -
Bpe15g00480 298 PANTHER - 1 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00480 - - - jre:109001681 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01266 Bpe-Chr2:16092205 Bpe15g00480 Bpe-Chr15:16121488 3.57E-19 dispersed
Bpe13g00062 Bpe-Chr13:2077648 Bpe15g00480 Bpe-Chr15:16121488 5.67E-34 dispersed
Bpe15g00480 Bpe-Chr15:16121488 Bpe04g01629 Bpe-Chr4:22531010 4.41E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1148 . . . . Bpe15g00480 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010266 4 0 0 1 2 1 0 0 1 0 1 2 0 0 0 0 1 4 0 0 0 2 2 1 0 0 1 0 1 3 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00480 Bpe_Chr15 FPKM 2.61263 1.802958 16.450134 16.556334 2.916658 3.213208 2.798147 0.138929 0.099871 0.290568