Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00481 ATGGAGGAAGAGGACGTGCTGTTTTTGGGCGTTGACGAGGGAGAAAATATGAAGAGCTTTGAAGTTCAGCGGGTTTTGCGAATGAAAGGAGGCGTGGGAGACGAAAGCTACGCCAAGAACTCTGGATCACAGAATGCGTTGCAGTCGATGTCAAGGCCACTGCTGGAGCAAGCGGTCGTAGGCTTCTGTAATGAAGCATTGCCTGAAGGCGTCGTCGCCATAGCCGACCTTGGCTGCTCGTCGGGACCAAACGCGCTGTTTGCTGTCTCAGAGATCACGACCATTTTTCACAAGGAGTGTTGTCAACTAGGCCGATCCCCGCCGGAGTTTGTAGTTTTCTTGAATGATCTCCCCGGAAACGATTTCAACACAGTTTTCAGGTCTCTCCCTGGTTTGCGCGACCAACTCCGGAAGGAGAATGGAGAGAAGTTTGGACATTGTTTCATTGCAGGTGTTCCTGGTTCCTTCCATGGAAGGCTGTTTCCCTCAAGAAGCCTGCATTTCGTTCACTCTTCTTTGAGCCTTCATTGGCTCTCCCAGATTCCTCCAGAGTTGAATGACAGGGAAAATGGATTGATCAACAAAGGGAAAATTTTCATATCGAAGACAAGCCCACCGGCAGTGATCGAAGCTTACTCAGCTCAGTTTTGGAAAGACTTCTCTTTGTTCCTAAAATCACGTTCGGAAGAAGTAGTCGGTGGAGGTCGGATGGTCTTCACCTTGAAAGCAAGGACATCCTCGGACCCAACCCCGGATGAAACCTGTCTACTCTGGGACTACCTGGGACAAGCCTTTCTTGATTTGGTTGCAGAGGGGCTGATGGACGAGGAAAAGCTAGATGCTTACAACGTACCGTTCTACGAGCCATATGTAGAAGATATCAGAGGAGAGATAGAGAGAGAAGGGTCGTTCTCGCTTCATCGGCTGGAGCCCATTGTGATGCCCTGGAACAACGTCAATGGCGGCGGGAAGTACGATAGAGCAGCAACAGCTCAACGAATGGCCATGGCGATGAGAGCAGTGAATGAATCGATGTTAGAGAGTCATTTCGGACCCCAAATTATCGACCCGTTGTTCCGGCGATTCGTCCAAGTTATGGCTGCTGATACGAAGGAATCGCAAACTGTAATCGTCATTGTTTCGTTGATCAGAAAGGATTGA 1161 49.53 MEEEDVLFLGVDEGENMKSFEVQRVLRMKGGVGDESYAKNSGSQNALQSMSRPLLEQAVVGFCNEALPEGVVAIADLGCSSGPNALFAVSEITTIFHKECCQLGRSPPEFVVFLNDLPGNDFNTVFRSLPGLRDQLRKENGEKFGHCFIAGVPGSFHGRLFPSRSLHFVHSSLSLHWLSQIPPELNDRENGLINKGKIFISKTSPPAVIEAYSAQFWKDFSLFLKSRSEEVVGGGRMVFTLKARTSSDPTPDETCLLWDYLGQAFLDLVAEGLMDEEKLDAYNVPFYEPYVEDIRGEIEREGSFSLHRLEPIVMPWNNVNGGGKYDRAATAQRMAMAMRAVNESMLESHFGPQIIDPLFRRFVQVMAADTKESQTVIVIVSLIRKD 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16123857 16125737 + Bpe001415.1 Bpe15g00481 116160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00481 386 Pfam SAM dependent carboxyl methyltransferase 65 383 IPR005299 GO:0008168
Bpe15g00481 386 Gene3D Vaccinia Virus protein VP39 40 315 IPR029063 -
Bpe15g00481 386 Gene3D - 25 373 IPR042086 -
Bpe15g00481 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 382 IPR029063 -
Bpe15g00481 386 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 22 383 - -
Bpe15g00481 386 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 22 383 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00481 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] K21483 tcc:18610736 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00376 Bpe-Chr2:2475844 Bpe15g00481 Bpe-Chr15:16123857 2.48E-112 dispersed
Bpe03g00037 Bpe-Chr3:627376 Bpe15g00481 Bpe-Chr15:16123857 5.48E-61 dispersed
Bpe15g00419 Bpe-Chr15:15751514 Bpe15g00481 Bpe-Chr15:16123857 1.55E-94 dispersed
Bpe15g00481 Bpe-Chr15:16123857 Bpe15g00861 Bpe-Chr15:18583558 7.46E-101 dispersed
Bpe15g00481 Bpe-Chr15:16123857 Bpe06g00040 Bpe-Chr6:460823 3.13E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1151 . . . . Bpe15g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01245 . . . . . . . . . . . . . . . . . . . Lsi07g01092 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013465 1 0 0 2 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 3 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00481 Bpe_Chr15 FPKM 28.396368 29.827551 45.722858 43.676159 59.849804 56.936859 62.536358 87.093193 99.607178 90.990555