Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00482 ATGGCCTCCTCAGCGCATCCATTGTCTCTTCCCCTTTCTTCCAAGCCCAGCTCCAAATTCTGTGTCACTAAACCCTCCTCTGCTAATTGGTTTCTAAGTGGTCCGAGCCGTACCTTGGCCTATCTTCCTTCTTTGCGTTCTTCGCGAGGCTCTATTGACTTGAATTCGAATGGATGTTCGGGATTGAACGTTAGGCGAAGTAGTCTTAGGGTTCTCGCTAATTCCGCTCAGATTATGGACCAGTCGCCGATTAAAACTGGTTCTCGGGCACCGACGATTGTGGAAGTGGATTTAGGTGACCGTAGCTATCCGATTTATATAGGATCTGGTCTTCTCGATCAACCTCACCTTCTCCAGAGACATGTCCACGGCAAGAGAGTTCTCGTGGTTACTAACAACAAGGTTGCACCATTGTACCTGGATAAAGTTGTCGATGCTTTGACTAGAGGGAACCCAAGAATATCAGTTGACTCTGTGATTTTACCTGATGGTGAGAAATACAAGGATATGGACACGCTTATGAAAGTCTTTGACAAAGCCATTAAGTCACGTCTAGACCGGAAATGTACTTTCGTTGCGCTTGGAGGTGGTGTTATCGGTGACATGTGTGGGTTTGCTGCTGCTTCATTTCTCAGGGGTGTCAATTTCATTCAGATTCCTACAACTGTTATGGCGCAGGTGGACTCTTCTGTTGGGGGCAAAACAGGGATAAATCACAGTCTTGGGAAGAACTTAATTGGTGCATTCTACCAACCTCAGTGTGTACTTGTAGATACTGACACTTTAAATACCTTGCCTGATAGAGAACTAGCATCAGGGTTTGCAGAGGTTATTAAGTATGGGCTTATAAGAGATGCAAAGTTTTTTGAGTGGCAAGAGGAGAACATGCCAGCGTTAATGGCTAGGGATCCAAGTGCACTGGAATATGCAATAAAACGCTCATGTGAGAACAAAGCTGAGGTTGTGGCATTGGATGAGAAGGAAAGCGGGGTGAGGGCAACACTGAACTTGGGCCACACATTCGGCCATGGAATAGAAACCGGGATTGGCTATGGTCAGTGGCTTCATGGTGAAGCTGTTGCAGCTGGCACAGTGATGGCAGTCGACATGTCATACCGTCTCGGATGGATAGACGATTCACTAGTGAAACGAGTTCATAATATACTAAAACAGGCTAAGCTGCCCACTTCCCCACCAGAAACCATGACCGTTGAGATGTTCAAATCAATTATGGCAGTTGATAAAAAGGTGGCCGACGGTCTACTTAGACTTATACTGCTGAAAGGACCTTTAGGTAATTGCGTGTTCACCGGTGACTACGATAGAACAGCACTGGACGAAACACTCCAAGCCTTTTGCAAGTCCTGA 1368 46.2 MASSAHPLSLPLSSKPSSKFCVTKPSSANWFLSGPSRTLAYLPSLRSSRGSIDLNSNGCSGLNVRRSSLRVLANSAQIMDQSPIKTGSRAPTIVEVDLGDRSYPIYIGSGLLDQPHLLQRHVHGKRVLVVTNNKVAPLYLDKVVDALTRGNPRISVDSVILPDGEKYKDMDTLMKVFDKAIKSRLDRKCTFVALGGGVIGDMCGFAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHSLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGFAEVIKYGLIRDAKFFEWQEENMPALMARDPSALEYAIKRSCENKAEVVALDEKESGVRATLNLGHTFGHGIETGIGYGQWLHGEAVAAGTVMAVDMSYRLGWIDDSLVKRVHNILKQAKLPTSPPETMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRTALDETLQAFCKS 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16128280 16131131 + Bpe001416.1 Bpe15g00482 116161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00482 455 Gene3D - 265 455 - -
Bpe15g00482 455 CDD DHQS 102 449 - -
Bpe15g00482 455 PANTHER 3-DEHYDROQUINATE SYNTHASE 90 451 - -
Bpe15g00482 455 SUPERFAMILY Dehydroquinate synthase-like 95 447 - -
Bpe15g00482 455 PANTHER 3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC 90 451 - -
Bpe15g00482 455 Gene3D - 78 264 - -
Bpe15g00482 455 Hamap 3-dehydroquinate synthase [aroB]. 91 453 IPR016037 GO:0003856|GO:0005737|GO:0009073
Bpe15g00482 455 TIGRFAM aroB: 3-dehydroquinate synthase 103 444 IPR016037 GO:0003856|GO:0005737|GO:0009073
Bpe15g00482 455 Pfam 3-dehydroquinate synthase 159 417 IPR030960 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00482 K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] - csv:101218240 714.531
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1153 . . . . Bpe15g00482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1695 Cone9ag1619 . . . . . . . Bda14g01069 . . . . . . . Cma16g01246 . . . . . . . . . . . . . . . . . . . Lsi07g01091 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009618 1 0 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00482 Bpe_Chr15 FPKM 1.504692 1.474146 3.555338 3.615324 2.214947 2.520339 2.222838 4.07777 3.710673 3.959338