Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00495 ATGTCATCAGAGGGAGGTAATCTTGATGCTCCTCCAGGAGGGAAAATGGAAAACACTTTGAAAACTGGCTTTAACCATGAAAGTAATGGAAAGATGGCTGTGGACAATGAGTTGACTGATGGAAGTCAATGTCCTGATGACCATGATCAGCTTGTACAAATAATCTTTGACTTAAGATCGCAGAATGAATTCTTGAAATCTCAGCTACAAAGTGTACAAAATCTTCAGTTGTCGAGACAAGCTGCTGCAAGTGAACATGAAGGTGAGGTATCTGCTGTTGTGAAAGCACTGCACGAAAAAGTGAAATCCTTGAACAAAGAAATTATTGAAGAAAAACAAACTCGAGGTGCAGCCGAGGAAGCATTAAAACATCTTCAAATGGCACACTCGGAAGCAGATGCAAAAGCGCTAGAGCTTTCTATAAAGCTTGAAGAAGCCCAACAGAAACTGGACCAAGAAATAAAAGAACGTGAAGAAAAATACTCAGAACTTGATTCAAAATTTAGCAGGCTTCACAAGCGGGCAAAACAGAGGATTCAAGATATTCAGAAGGAAAAAGATGACCTTGAGGTCCGGTTTCAAGAGGTTAGTGAAACATCAGAGCGTGCAGTATCCCAGCAGGCTACATTGCAACAAGAGTTAGAGCGAACTCGGCAGCAGGCTAATGAAGCATTGAAAGCAATTGATGCAGAGAGACAACAATTACGAAGTGCCAATAACAAGCTCCGAGACAATATAGAGGAACTGCGAAATTCATTGCAACCTAAAGAAAATGCTCTTGAGAGGATGCAGCAGTCGCTTTTGGAGAAGGACCAGATGCTGGAAGATTTGCAAAATTCACTTCAAGCTGCGGAGGAAAGAAGGCAAGCTTCATTGGCTGAACTCTCAGCTAAACATCAGAAGAGTTTGGAAAATTTGGAAGCTCAACTTGCTGAGGCTTTATCTGACAGATGTAAAGCTGGTGAAATTATTTCTGGACTCCAGGCATTAATTGCAGAGAAAGAAACAAAGATCGCAGAGATGGATGCAGCTTCAACTGGTGAGGCAGCCCGACTTAGAGCCGCAGTGGAAACTGTAAAGGGGGAGGCTGCGCACCTGAGACATGAACATGAGAAGGAAAAAGAGAGCCTGGAGGCTTCCTTGCAGGCTATCAAAATGAAGTTGGAAATTGCTGAGAGTAACTATATACGTGCTGAAATTGAAGCAGCTAAGACAAGAAGTCAGCTGGAATCAGAAATTTCTGCCCAAAACAGGATGCTCAGTGCCAAAGATGCTGAACTGTCGGTGTTCAAAGAGGAGGTAAAATGCCTCGAAAAAGAATTTTCATCATACAAGGCTCGTGCCCATGCACTTCTGCAGAAGAAGGAGGCAGAGCTAGCTGCAGCTGTTGACTCTGAGCAACTTAAAATACTTGAGGAAACATTAGAGGAGACTGAAAAGGAATTAACTTTGGCATTGGCAGAGAAGGATCAGGTTCTGTTAGATCTTCAGAATGCATTAGCAAATCACAATAAAGAACTAACAGACAAAGATTCAATTCTTATTGATGCCAAAAATGAAATCAAAATCTTAGAATCAAATCTACATGCTGCCAATGCTCGTCTTCAGTCAGAAAAAGAAGTTTGGGAAGTGAACCTTCAAAATGTGGAAGAAACATGGCGGATTAGATATGATACTCTAAAAGCTCAAAAGGAATCATCAACTGGGCAAGACTGTCAAAAAGAATTGGAGGAGCTTAAACAACGATACTTAAGAATGAAGGAAGAGCATGACTCATTCCGTGATCTCGCTGATAGAATGATTGAGGAAAAGGATAGAGAAATCGCCAAACTTGTAGAAGATAATAAGAATCTTCATCAATCTCTTGAACCACGACTTGTATCTCTGCCAAAGCAGGATGTATCAAATTTTGGCACCTCTGCAGCTGAACAGCAAATTCTGATTTTAGCGAGGCAACAAGCTCAGAGAGAAGAAGAACTAGCCCAGTCACAACGGCATATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACGTGAGAATCGTCTTCATAGTCAACAGCAAGCCATGTTGAAGGAAGAGTTTCGTAACATGGAAAGAATGCAGAAGAGGGAAGGGGTGGACATGACATATCTTAAGAATGTTGTCTTGAAACTTCTTGAAACAGGAGAGGTGGAAGCTCTGCTACCTGTAATTGGGATGCTCCTTCAATTTAGTCCTGAAGAGATACAAAAGTGTCAACAAGCCTTCCCTGCAGCAACTACTGATGTTCCACCTAGCCCCTCGAGTGATCCTGCAGGACCTTCTCGATCCCTTTTCTCAAGATTCTCATTTACATGA 2340 41.84 MSSEGGNLDAPPGGKMENTLKTGFNHESNGKMAVDNELTDGSQCPDDHDQLVQIIFDLRSQNEFLKSQLQSVQNLQLSRQAAASEHEGEVSAVVKALHEKVKSLNKEIIEEKQTRGAAEEALKHLQMAHSEADAKALELSIKLEEAQQKLDQEIKEREEKYSELDSKFSRLHKRAKQRIQDIQKEKDDLEVRFQEVSETSERAVSQQATLQQELERTRQQANEALKAIDAERQQLRSANNKLRDNIEELRNSLQPKENALERMQQSLLEKDQMLEDLQNSLQAAEERRQASLAELSAKHQKSLENLEAQLAEALSDRCKAGEIISGLQALIAEKETKIAEMDAASTGEAARLRAAVETVKGEAAHLRHEHEKEKESLEASLQAIKMKLEIAESNYIRAEIEAAKTRSQLESEISAQNRMLSAKDAELSVFKEEVKCLEKEFSSYKARAHALLQKKEAELAAAVDSEQLKILEETLEETEKELTLALAEKDQVLLDLQNALANHNKELTDKDSILIDAKNEIKILESNLHAANARLQSEKEVWEVNLQNVEETWRIRYDTLKAQKESSTGQDCQKELEELKQRYLRMKEEHDSFRDLADRMIEEKDREIAKLVEDNKNLHQSLEPRLVSLPKQDVSNFGTSAAEQQILILARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQQAMLKEEFRNMERMQKREGVDMTYLKNVVLKLLETGEVEALLPVIGMLLQFSPEEIQKCQQAFPAATTDVPPSPSSDPAGPSRSLFSRFSFT 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16200344 16211751 + Bpe001428.1 Bpe15g00495 116174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00495 779 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 58 749 - -
Bpe15g00495 779 ProSiteProfiles GRIP domain profile. 702 749 IPR000237 -
Bpe15g00495 779 Coils Coil 562 596 - -
Bpe15g00495 779 MobiDBLite consensus disorder prediction 1 42 - -
Bpe15g00495 779 Coils Coil 349 408 - -
Bpe15g00495 779 Coils Coil 172 316 - -
Bpe15g00495 779 Coils Coil 601 621 - -
Bpe15g00495 779 Coils Coil 514 552 - -
Bpe15g00495 779 Coils Coil 420 454 - -
Bpe15g00495 779 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 58 749 - -
Bpe15g00495 779 Gene3D - 148 320 - -
Bpe15g00495 779 Coils Coil 94 121 - -
Bpe15g00495 779 Coils Coil 129 167 - -
Bpe15g00495 779 Coils Coil 653 694 - -
Bpe15g00495 779 MobiDBLite consensus disorder prediction 749 779 - -
Bpe15g00495 779 Coils Coil 461 506 - -
Bpe15g00495 779 Pfam GRIP domain 706 745 IPR000237 -
Bpe15g00495 779 SMART 1grip 705 749 IPR000237 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00495 - - - csv:101223202 973.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00495 Bpe_Chr15 FPKM 12.151819 13.182792 8.830795 8.160465 18.05504 15.407964 16.695793 7.272309 6.459983 6.552358