Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00517 TTTTTGTTGTGTAAGGTTGAGTGGAAGGAAGTGACGCGATTGTGCCATAGAAAGCCAGTTCTGACTGTGAATGGAGATTATCCAGGGCCGAACATTGCAGTGCATGAAGGTGATAATGTTGAAATAAAGGTCACTAATCTTGTCTCTGCAAACACTACCATCCATTGGCATGGTGTTAAGCAATTGAGGACAGGATGGGCAGATGGACCAGCTTACATAACACAGTGCCCTATAAAAGAAGGGCAGTCCTACACTTACAGGTTTAAAGTGATTGACCAAAGAGGCACTCTTTGGTGGCATGCCCATCATTCTTGGCAACGTGCCTCTGTTCATGGGGCTTTTATCATCTACCCTAATCTCCCTTTTCCCTTTTCTTGTCCTCCCATCCATGCCCAATTCCCTATCATTTTTGGTGAATGGTGGAATCGACCGGTCGAGGTAATCGAAAAAGAGATGATGATGAGTGGAGCAGGCCCTGATAGTTCAAATGCTTACACCATTAATGGTTTTCCGGGTCCTCTCTACCCTTGCTCTAACAAAGATACTTGGATCCAAATGGTCCAACCCGGGAAAACCTACATGCTTAGAATCATAAATGCAGCCCTGAATGACGAACTTTTCTTCGCAATTGAGAAACACACCATGACAGTAGTGGAGATCGATGGTGTTTACACTAAACCCTTCAAAACGAAAGCCATCATGATCGCTCCCGGCCAAACCACCGTCGTTTTGATCACCACAAACCAAGTTCCAGACTCCTCTTCCATGTTTCCGATGGCTGCTAGGCCATATTTGACTTCTGTTTTTCCTTTCAACAACTCCACCACATTAGGCTTTTTGCAATATACAAATAGTATCAAGCTCGATAAGTTTAAGCCCCTTGCGAATAATGTCCCTCGTAATCTCGTCGTTAATAACCTTCCTGAAATGAAGGATGATGCCTTTACTGCATCGTTTTCGGAAAAACTCAGAAGCCTCGGATCGGCTCAGTATCCGTGCAACGTGCCTAAAACGATAGACAAGCGAGTAGTGATGACCATAAGTCTTAACCTCCAAGATTGTCCACCCAACAAGATTTGCAAGGGCTATAATGGAAAGAGGTTTTTCGCATCCATGAATAATCAATCGTTTGTCCGACCGACATTTTCGATATTGGAATGTCATTACAAGAACATCACATCGACTACCTACTCCTCGAATTTTCCAGAATACCCGCCAAACAAATTTGACTTCACCGGAGTCGATCCGTTGACGGAAAATATGAACGCCGAATTCGGCACGAAGCTAATAAGGGTACCTTATGGTACTAATCTAGAGATTGTTTTACAAGGTACGAGTTTTCTCAACATCGAGAATCATCCGATTCATGTTCATGGACATAACTTCTTCGTGGTCGGAAGTGGGCCAGGAAACTTTGACGTCGCCAAGGATCCGATGAAATACAATCTCGTCGACCCGCCGGAGAGAAATACGGTGGCGGTTCGGACCGGTGGGTGGGCAGCAATAAGAATGAAGGCAGACAATCCTGGGGTTTGGTTCATCCATTGCCATCTTGAAGAGCATACCTCATGGGGACTTGCAACTGCTCTTATCGTCGGAAATGGTCCCGGAAAATTCAATTCCATCTTCCCTCCTCCTCAAGATCTTCCTTCCTGCTGA 1659 44.97 FLLCKVEWKEVTRLCHRKPVLTVNGDYPGPNIAVHEGDNVEIKVTNLVSANTTIHWHGVKQLRTGWADGPAYITQCPIKEGQSYTYRFKVIDQRGTLWWHAHHSWQRASVHGAFIIYPNLPFPFSCPPIHAQFPIIFGEWWNRPVEVIEKEMMMSGAGPDSSNAYTINGFPGPLYPCSNKDTWIQMVQPGKTYMLRIINAALNDELFFAIEKHTMTVVEIDGVYTKPFKTKAIMIAPGQTTVVLITTNQVPDSSSMFPMAARPYLTSVFPFNNSTTLGFLQYTNSIKLDKFKPLANNVPRNLVVNNLPEMKDDAFTASFSEKLRSLGSAQYPCNVPKTIDKRVVMTISLNLQDCPPNKICKGYNGKRFFASMNNQSFVRPTFSILECHYKNITSTTYSSNFPEYPPNKFDFTGVDPLTENMNAEFGTKLIRVPYGTNLEIVLQGTSFLNIENHPIHVHGHNFFVVGSGPGNFDVAKDPMKYNLVDPPERNTVAVRTGGWAAIRMKADNPGVWFIHCHLEEHTSWGLATALIVGNGPGKFNSIFPPPQDLPSC 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16359413 16361908 + Bpe001450.1 Bpe15g00517 116196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00517 552 Gene3D - 130 328 IPR008972 -
Bpe15g00517 552 PANTHER LACCASE-1 10 552 - -
Bpe15g00517 552 CDD CuRO_3_LCC_plant 397 535 IPR034289 GO:0005507
Bpe15g00517 552 PANTHER MULTI-COPPER OXIDASE 10 552 IPR045087 -
Bpe15g00517 552 SUPERFAMILY Cupredoxins 11 144 IPR008972 -
Bpe15g00517 552 Pfam Multicopper oxidase 6 118 IPR011707 GO:0005507
Bpe15g00517 552 Gene3D - 4 118 IPR008972 -
Bpe15g00517 552 CDD CuRO_2_LCC_plant 133 282 IPR034285 -
Bpe15g00517 552 ProSitePatterns Multicopper oxidases signature 1. 510 530 IPR033138 -
Bpe15g00517 552 Gene3D - 358 552 IPR008972 -
Bpe15g00517 552 TIGRFAM laccase: laccase 5 552 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bpe15g00517 552 Pfam Multicopper oxidase 133 284 IPR001117 -
Bpe15g00517 552 SUPERFAMILY Cupredoxins 130 299 IPR008972 -
Bpe15g00517 552 CDD CuRO_1_LCC_plant 5 118 IPR034288 GO:0005507
Bpe15g00517 552 ProSitePatterns Multicopper oxidases signature 2. 515 526 IPR002355 GO:0005507
Bpe15g00517 552 SUPERFAMILY Cupredoxins 332 551 IPR008972 -
Bpe15g00517 552 Pfam Multicopper oxidase 401 534 IPR011706 GO:0005507|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00517 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100853765 862.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00441 Bpe-Chr13:11953027 Bpe15g00517 Bpe-Chr15:16359413 0 dispersed
Bpe15g00517 Bpe-Chr15:16359413 Bpe15g01182 Bpe-Chr15:20666842 1.27E-169 dispersed
Bpe15g00517 Bpe-Chr15:16359413 Bpe15g00426 Bpe-Chr15:15780045 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00705 Chy12g01406 Cme12g01841 . . . . . Bpe15g00517 . . . . . . Cma18g00063 . Car18g00055 Cpe09g01121 . . . . . . . . Cla04g01057 Cam04g1099 Cec01g1614 Cco01g1659 Clacu04g1124 Cmu04g1108 Cre01g1408 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00517 Bpe_Chr15 FPKM 13.44601 11.739959 15.454791 14.56671 15.373856 15.189802 16.757044 17.378416 19.636305 19.880903