Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00519 ATGGGTATAAAAGATCTTCTCAAATTCACCAAACCTTACATGGATTCCATTCATGTAAATAAATATGCAGGAAAACGGGTAAGAGATCGTTTGCTTCTCTGCCTTTGGTTTTTCTTGATATTTCCTTTCTATAATGGGGATATTTTGCAGGTGGGTATTGATGCTTATTCATGGCTTCACAAGGGAGCTTATTCATGCAGTATGGAGATTTGTCTTGATTCGGATAGCGATAGGAAATCACGCTACTTGGACTACTGTATGCATAGAATCGATCTTCTTCGCCATTACAAGATAGTGCCTGTTGTTGTGTTTGATGGGGGGAATCTTCCTTGTAAGGCTTTGACTGAGCAAGAGAGACACAGGCATGTTTCCTTAATTTCTCATTTCTTTTTTGTTAAAATTCAAGACTACCCACTTGATCAGTGGCTAATTCGCAAGCAGCTGAGTTCAAGCATTACAATCTGCACGTTTTTTTTTTTTGGTTTATCCAGAAGAAGAAAAGCTTGTAGGGATTTAGCCATGGAGAAACTGAAAGAGGGAAATGTCAGTGCTGCAACTGAACTCTTTCAGCGAGCTGTAAGCATTACTCCATCTATGGCACATAAACTCATTCAGCTCTTGAGAGCACAAAACATTGAATTTGTGGTAGCTCCTTACGAGGCTGATGCACAGTTAGCGTATTTATCGAACCTTGAAGTGGAAAAAGGTGGAATTGTGGCTGTGATTACAGAGGATAGTGATCTGATTGCATATGGTTGCAAAGCTGTAGTGTTTAAGATGGACCGACATGGCAATGGTGAAGAGCTTTTGCTGGACAAAGTTTTTTATTCTCCTACTTCCACGCCTTCCTTCCGAAGTTTTGACATGGAGTTGTTCACAGGCATGTGTGTTTTAGCTGGTTGTGACTTTCTTCCGTCTGTTCCTGGAATCGGAATTGCAAAGGCCTACGCCTTGGTTTCGAAGTATCAGAATCTGGACCGTGTTCTATCAATTCTAAAGTTAGCGAAAAGAAATAAAATGTCAGAAGTTTACGCAAGGTCTTTCAAAGAAGCCATGGCTGTTTTCCGGCACGCTCAAATATACGATATCAACACAAAAGAACTTAGACATATGACACCAGTTTCTCAATGCCTTGATGATTTCCTTCATGGGGAGCTTGATTTCTTGGGACCAGAAATCCCTGCTTCAATAGCTTGTTCAATTGCTGAAGGCAAATTAGACCCTATAACCATGGAACCCTTTAATCCTTCCCCAAGTCCCGGATGTTATTCAGACAACTCCAAAACCAAATCTATGGTCAGATTTCGCCGATCCAGGGCTTCCGCTGTGCCTGAACAAGATAGCTGCTTTACAGTCGTTCCGGCCCCTAAAAGAAAGCGGAAACCAACTTCGGAGGTCAAGTATTTAAACGAATCTCTAGCACTGGAGAAGTTAATTGTTCCAACCGAGATCGATGGTACAACAAAAAATGGAAAGGTGGTTGAGATTTTATCATTACGGATTCCTGACAATAACCCATTCAAGAGAAAGACAGGCAATGAAATCGTCGTGGATTGGATGGAGAGTGTCTCCGAAGAAATATCGGTGGCGAATGAGGTTGAATACATGGATGTTCCATTTTCCGGGAAAAGAAAATGCGAGAAAGTTGACTCAGACGAGCCCGAGTCTGGAGTGACACAGGCAGGAGACGGAACGAGATTGGAATCACAGGAGAGCGTAAATTCTGAAATGGGTAAAATCACCGGTGGGAGGATGAGGGAGAAGAAGAAGCAGAAGACAAGTAGTAGCAAGGATTTAGAGAGTAAAAGAGGTACCATCTTCAACTTCTTCTCCAGTGTAGTTTTCTTAGTTTAA 1854 41.8 MGIKDLLKFTKPYMDSIHVNKYAGKRVRDRLLLCLWFFLIFPFYNGDILQVGIDAYSWLHKGAYSCSMEICLDSDSDRKSRYLDYCMHRIDLLRHYKIVPVVVFDGGNLPCKALTEQERHRHVSLISHFFFVKIQDYPLDQWLIRKQLSSSITICTFFFFGLSRRRKACRDLAMEKLKEGNVSAATELFQRAVSITPSMAHKLIQLLRAQNIEFVVAPYEADAQLAYLSNLEVEKGGIVAVITEDSDLIAYGCKAVVFKMDRHGNGEELLLDKVFYSPTSTPSFRSFDMELFTGMCVLAGCDFLPSVPGIGIAKAYALVSKYQNLDRVLSILKLAKRNKMSEVYARSFKEAMAVFRHAQIYDINTKELRHMTPVSQCLDDFLHGELDFLGPEIPASIACSIAEGKLDPITMEPFNPSPSPGCYSDNSKTKSMVRFRRSRASAVPEQDSCFTVVPAPKRKRKPTSEVKYLNESLALEKLIVPTEIDGTTKNGKVVEILSLRIPDNNPFKRKTGNEIVVDWMESVSEEISVANEVEYMDVPFSGKRKCEKVDSDEPESGVTQAGDGTRLESQESVNSEMGKITGGRMREKKKQKTSSSKDLESKRGTIFNFFSSVVFLV 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16365026 16368425 - Bpe001452.1 Bpe15g00519 116198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00519 617 SMART HhH_4 289 322 IPR008918 GO:0003677|GO:0003824
Bpe15g00519 617 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 164 608 IPR006084 -
Bpe15g00519 617 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 27 IPR006084 -
Bpe15g00519 617 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 50 122 IPR006084 -
Bpe15g00519 617 MobiDBLite consensus disorder prediction 546 599 - -
Bpe15g00519 617 MobiDBLite consensus disorder prediction 562 577 - -
Bpe15g00519 617 ProSiteProfiles TPR repeat profile. 166 199 IPR019734 GO:0005515
Bpe15g00519 617 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 287 416 IPR036279 -
Bpe15g00519 617 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 50 122 - -
Bpe15g00519 617 Pfam XPG N-terminal domain 50 121 IPR006085 GO:0004518
Bpe15g00519 617 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 224 IPR006084 -
Bpe15g00519 617 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 100 119 IPR006084 -
Bpe15g00519 617 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 48 62 IPR006084 -
Bpe15g00519 617 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 292 307 IPR006084 -
Bpe15g00519 617 Gene3D - 1 277 - -
Bpe15g00519 617 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 164 608 - -
Bpe15g00519 617 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 27 - -
Bpe15g00519 617 SUPERFAMILY PIN domain-like 50 302 IPR029060 -
Bpe15g00519 617 ProSitePatterns XPG protein signature 2. 211 225 IPR019974 GO:0016788
Bpe15g00519 617 Gene3D - 285 358 - -
Bpe15g00519 617 MobiDBLite consensus disorder prediction 581 599 - -
Bpe15g00519 617 SMART xpgn3 1 126 IPR006085 GO:0004518
Bpe15g00519 617 Pfam XPG I-region 211 302 IPR006086 GO:0004518
Bpe15g00519 617 CDD PIN_EXO1 1 275 IPR044752 GO:0046872
Bpe15g00519 617 SMART xpgineu 208 281 IPR006086 GO:0004518
Bpe15g00519 617 CDD H3TH_FEN1-like 290 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00519 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - qsu:112037099 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01114 Bpe-Chr11:8331187 Bpe15g00519 Bpe-Chr15:16365026 5.25E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00519 Bpe_Chr15 FPKM 6.466056 6.659464 5.751642 5.830918 5.613406 5.109335 5.785626 5.087549 4.629653 4.94382