Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00520 ATGGCGGACGGGCTTGTTCTTCGTGGTACAATGAGGGCTCACACCGATATGGTGACCGCAATTGCCACGCCGATCGATAACGTCGATATGATTGTTACGTCTTCCCGTGACAAATCGATCATCGTTTGGAATCTAACCAGGAACGAGAAGACCTACGGAGTGCCGCGCCGCCGTTTGACTGGGCATTCTCACTTCGTTGAGGACGTCGTTCTCTCGTCCGATGGTCAATTCGCTCTCTCTGGCTCGTGGGACGGGGAGCTCCGCCTCTGGGACCTTGCTGCCGGTGTTTCTGCTCGGAGGTTCGTTGGACACACTAAAGACGTCCTCTCTGTTGCATTCTCTTATGACAACCGTCAGATCGTTTCGGCCTCTAGGGACCGTACGATCAAGCTGTGGAATACTTTGGGTGAGTGCAAGTATACTATTCAGGAGGGAGATGCTCATTCGGATTGGGTCAGTTGTGTTAGGTTTAGTCCTAATACCAACCAACCAACTATTGTTTCTGCCTCGTGGGATAAGACCGTGAAGGTCTGGAACCTGTCCAACTGCAAGTTGAGGAGCACTTTAGCTGGTCACGGTGGCTATGTGAACACAGTTGCTGTGTCGCCAGATGGGTCGCTGTGCGCAAGTGGAGGGAAGGACGGAATGATTCTTCTGTGGGATTTGGCGGAGGGGAAAAGACTGTACTCGTTAGATGCGAGTTCTATTATTCATGCACTTTGTTTCAGTCCCAATAGGTATTGGCTTTGCGCTGCAACTGAGAACAGCATAAGGATCTGGGATTTGGAGAGCAAGAGCATTGTTGAGGATTTGAAAGTTGATCTCAAGGCTGAAGCGGAGAAAACTGATGACACGCATGCTGCGACTGCCAACAAGAGGAAGGTAGTCATCTACTGCACAAGCTTGAGCTGGAGCGCTGATGGTAGCACATTGTTTAGTGGTTACACTGATGGTGTAATCAGAGTCTGGGGCATTGGCCGAATATAG 987 50.56 MADGLVLRGTMRAHTDMVTAIATPIDNVDMIVTSSRDKSIIVWNLTRNEKTYGVPRRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSARRFVGHTKDVLSVAFSYDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHSDWVSCVRFSPNTNQPTIVSASWDKTVKVWNLSNCKLRSTLAGHGGYVNTVAVSPDGSLCASGGKDGMILLWDLAEGKRLYSLDASSIIHALCFSPNRYWLCAATENSIRIWDLESKSIVEDLKVDLKAEAEKTDDTHAATANKRKVVIYCTSLSWSADGSTLFSGYTDGVIRVWGIGRI 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16369703 16371483 - Bpe001453.1 Bpe15g00520 116199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Bpe15g00520 328 PANTHER BNAA06G12310D PROTEIN 1 327 - -
Bpe15g00520 328 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 328 IPR001680 GO:0005515
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Bpe15g00520 328 Gene3D - 4 328 IPR015943 GO:0005515
Bpe15g00520 328 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Bpe15g00520 328 SUPERFAMILY WD40 repeat-like 7 325 IPR036322 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 227 261 IPR001680 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 144 179 IPR001680 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 300 323 IPR001680 GO:0005515
Bpe15g00520 328 Pfam WD domain, G-beta repeat 9 44 IPR001680 GO:0005515
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Bpe15g00520 328 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 327 IPR045223 GO:0015935|GO:0043022
Bpe15g00520 328 CDD WD40 7 323 - -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Bpe15g00520 328 ProSitePatterns Trp-Asp (WD) repeats signature. 31 45 IPR019775 -
Bpe15g00520 328 SMART WD40_4 182 221 IPR001680 GO:0005515
Bpe15g00520 328 SMART WD40_4 224 261 IPR001680 GO:0005515
Bpe15g00520 328 SMART WD40_4 4 44 IPR001680 GO:0005515
Bpe15g00520 328 SMART WD40_4 52 91 IPR001680 GO:0005515
Bpe15g00520 328 SMART WD40_4 94 133 IPR001680 GO:0005515
Bpe15g00520 328 SMART WD40_4 289 324 IPR001680 GO:0005515
Bpe15g00520 328 SMART WD40_4 135 179 IPR001680 GO:0005515
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Bpe15g00520 328 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 328 - -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bpe15g00520 328 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Bpe15g00520 328 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Bpe15g00520 328 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Bpe15g00520 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe12g00703 Bpe15g00520 CCT
Bpe13g00370 Bpe15g00520 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00431 Bpe-Chr2:2822589 Bpe15g00520 Bpe-Chr15:16369703 1.60E-14 dispersed
Bpe02g00994 Bpe-Chr2:9754380 Bpe15g00520 Bpe-Chr15:16369703 1.81E-18 dispersed
Bpe11g01397 Bpe-Chr11:10413996 Bpe15g00520 Bpe-Chr15:16369703 3.95E-06 dispersed
Bpe15g00520 Bpe-Chr15:16369703 Bpe06g00115 Bpe-Chr6:1804140 5.82E-08 dispersed
Bpe05g00473 Bpe-Chr5:19032683 Bpe15g00520 Bpe-Chr15:16369703 1.62E-06 transposed
Bpe13g00370 Bpe-Chr13:11453677 Bpe15g00520 Bpe-Chr15:16369703 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00520 K14753 - zju:107418716 615.15