Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00529 ATGGCGGTTCCTTCACTGATGGACACACTGTTCCAGCGCAGTTTGGACGACCTCATCAAAGGCTTCCGGCAGCGGCTCATCGGGTTGAATAATCATGCGTCAGCAGTCAAACTTGCAGTGAGGAGGATTCGGGAGTTGCTCGCAGATGATGACCGAAATCTAAATTATCTTGGATTGCATGCCCATTCTATCATTTTAGGTGAGCATTTGTGGGCTGTTTTAGAAAACAAGGATTTTGTGATCAAATCTTTGAGTGATGGAGATCCTAACATAAAAATTGAGTCCGTCTTAGTTAATCTTGCCCATGATATTGGACTGAGAGTCAGAGATGCTAGGCCAGCACGCGATCGAGTTGGTCATAATTTGCTGATTGACCCAGCATTGCTTGATAATCAATTTCTCCATGGGATACTGTCAGCTGCTGCTTGGCTGTGCGGGGAATACGTTGAATTTTCAAAGAAACCATTAGAACTTATTGAGGCATTAGTGAACGAAGAAGTGGACAAAGCTCTACGACATTGTTCCCGCTCCATGACTAGGTCTTCTTCCCTTCGAATTCAAGCCCTAGAGCCATCCAGTCTGCAACTAGTCTTCCCCAAATTCCTCTCTCTCCCCATTTTCACCTCCAGCAAAGTCCTTGACGTCGACCGCAATCGTCTCCGCCTCCGCATTGTCAACAAATCCACCGGCCACGTGGTCCCCGCGACTCTACTGCAGTCGATCCGCGTTGAGATCGTGGTTCTCGACGGAGATTTCGCCGGAGCGGAGAAGGAAACCTGGAGCAGCAAAGAGTTCGAGGCGAAAGTCGTGAAGGAGAGGATCGGGAAGAGGCCACTGATTCACGGCGATGTGAATATCATAATGAGAGACGGGGAGGCGACAATTGGGGATATCGAATTTACGGATAATTCGAGCTGGATTCGGAGCAGAAGATTCAGGATCGGGGCGAGGGTTTCCCCAGGTTCAAGCTATCAAGGTGTTCGAATTCGCGAAGCTGTTACCGAAGCTTTCACGGTCAAAGATCACCGCGGAGAACTATACAAGAAGCACCACCCACCAGCGTTGGGTGATGAAGTATGGAGGCTTGAAAAGATTGGAAAAGATGGAAAATTTCACAGGATGCTCTCTCAAGAACACATCAACACAGTTCAAGACTTCTTAAAATTGTCCACTGTCGACCCACAAAGGCTCCGAAAGATTTTAGGAAATGGGATGTCTGAGAAAATGTGGGATGTGACGCTTAAACATGCGAGGACATGTGAAATGGGCACAAAAATGTATATTTACAGAGGACATGATGTCATTCTCGTCCTGGACCCAATATGTCAACTTGTTAGGGGGATAATTAACGGACAAGTATGCTCTTCAAATGGTACCTCCCACATACCTAAGCCCTATGTTGATAGTTTATTGAGACAGGCCTATGAGAGCTGGCATGGCTTGGAAGTAGTAGACGGTGCCGCAAACGAAACTAATCTGATAACACAAGGTATTTGA 1497 46.96 MAVPSLMDTLFQRSLDDLIKGFRQRLIGLNNHASAVKLAVRRIRELLADDDRNLNYLGLHAHSIILGEHLWAVLENKDFVIKSLSDGDPNIKIESVLVNLAHDIGLRVRDARPARDRVGHNLLIDPALLDNQFLHGILSAAAWLCGEYVEFSKKPLELIEALVNEEVDKALRHCSRSMTRSSSLRIQALEPSSLQLVFPKFLSLPIFTSSKVLDVDRNRLRLRIVNKSTGHVVPATLLQSIRVEIVVLDGDFAGAEKETWSSKEFEAKVVKERIGKRPLIHGDVNIIMRDGEATIGDIEFTDNSSWIRSRRFRIGARVSPGSSYQGVRIREAVTEAFTVKDHRGELYKKHHPPALGDEVWRLEKIGKDGKFHRMLSQEHINTVQDFLKLSTVDPQRLRKILGNGMSEKMWDVTLKHARTCEMGTKMYIYRGHDVILVLDPICQLVRGIINGQVCSSNGTSHIPKPYVDSLLRQAYESWHGLEVVDGAANETNLITQGI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16449076 16456879 + Bpe001464.1 Bpe15g00529 116208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00529 498 Gene3D - 18 103 IPR011989 -
Bpe15g00529 498 PANTHER OS02G0177800 PROTEIN 158 495 IPR012416 GO:0005516
Bpe15g00529 498 Pfam Calmodulin binding protein-like N-terminal domain 194 342 IPR046831 -
Bpe15g00529 498 Pfam Calmodulin binding protein central domain 355 420 IPR046830 -
Bpe15g00529 498 Pfam Calmodulin binding protein C-terminal domain 425 483 IPR046829 -
Bpe15g00529 498 PANTHER PROTEIN SAR DEFICIENT 1 158 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00529 - - - pvy:116137752 431.024
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00259 Bpe15g00529 CCT
Bpe12g00581 Bpe15g00529 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01208 Bpe-Chr13:17426729 Bpe15g00529 Bpe-Chr15:16449076 8.85E-99 dispersed
Bpe13g00358 Bpe-Chr13:11355168 Bpe15g00529 Bpe-Chr15:16449076 3.84E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g294 . . . . . . . . . . . . . . . Cpe20g00130 . . . . . . . . . . . . . . . Cone2ag0623 . . . Lsi02g00191 . Chy12g01428 Cme12g01866 . . . . . Bpe15g00529 . . . . . . . Car13g00849 . . Cpe18g00828 . . . . . . . . . . . . . . . . . .
Vvi17g694 Blo04g00832 . . . Bpe12g00581 Bpe13g00259 Bma06g00202 . . . Cma10g00146 Cma11g00114 Car10g00138 Car11g00113 . . Cpe04g01537 Bhi02g00399 Tan09g2205 . . . . . Cla06g01640 Cam06g1823 Cec06g1872 Cco06g1878 Clacu06g1782 Cmu06g1723 Cre06g2542 Cone2ag0885 Cone16ag0125 Cone13ag0122 Cone19ag0124 . . . . Blo13g00044 . . . . Bpe15g00529 . Bma08g00181 . Cmo10g00154 Cmo11g00118 . . . . . . . . . . . . . . . . . . . . Lsi06g01525 Csa01g00177 Chy02g02555 Cme02g01942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00529 Bpe_Chr15 FPKM 23.510252 25.096785 17.530382 15.944742 30.613171 31.267216 32.522419 19.717705 19.74642 18.988983