Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00530 ATGAGGTTTTCTCTATCCTATTGTTGCCTTTTGCTCATCGGTTGGAGTTTTCGTCGTCGGCTATCTTTCTGCGACTCTCGTGAAGACTTTTCCGATACTTGTCCGGAGTTCAGCTGTGGAGAAGTGAACAATGTTTCTTATCCTTTTTGGAGTGGTGATAACTATGAAAACTGTGGTCGACGAGGGTTGAAGCTCAACTGCCATGACGACGATCATCAATACTTCACCATGGAAATGAACTCTCTGGATTATCGCGTTATCAGCATCAATACAACCACACACACAATGAAAATCGCGAGGTCCGATTTGTACGACAGTCGTTGCACTAGAAATTTCACGAACACGATCTTGGATCTCTCTCTCTTAAATTACTCTCCTAATCTTCGAAATCTCACTGTATTCTACGACTGCACAAACCCATCATTCATATCGAATGAAACTCTTTCCAGAAACAGATTCGATTGTACCTACAATAACAGCGACACTGTTAATTTCGTCTTCTCAGATGAATCGATGATGGAGAATTTGAAATCCGAGCTCGATAGTTGTGATAACAAAATAATAGTTCCGGCGTTTCCAGAGTCTGAGAATGGAGCAGAAGATATTGACAGTGCTTTTCACGGCGGTTTCGCGGTGACATACGATATATTGGGAATGGCCTCGACCTGTGACACTTGCCGACAATCGGGTGGGTTGTGCCTGTCGAACGATTCATTTCCATTTCTCTGCTGGTGCCGCGGTCAACCCCCTCAGCCGCTTAATAAATGTCCAGCTCCAGACATAAAGAATGTGAGAAAGAAGATCATAATAGGTGTTTGCTCAGGTCTCGGGGGTGTACTTCTGATGTGCTTTGTCTTTCTCATCTGGGCATACCGCAAGAATAATAAATATGTTTTCTCATCTGTTGTACCTCGAAGCTTTTCCTCGTACTTCTCCTCACAAAGTACCGTTGACAAGGAATGTATCTACGCTGGTGTTCATCTATTTTCATACAGTGAACTCGAAGAAGCTACCAACAAATTTGATTCCGTTAACGAACTTGGAGATGGAGGATTTGGTACTGTATATTATGGGAAACTTCGGGATGGCCGAACTGTAGCAGTGAAACGCTTGCATGAAAATAATTTCAAGAGAGTTGAGCAGTTCAGGAATGAAGTAGAAATTCTTTCTCGTCTACGCCACGAGAATCTTGTTTCTCTATATGGTTGTACATCTAGACAGTGTAATGAACTCTTGCTTGTTTATGAATACATCCCCAATGGCACAGTGGCTGACCATCTTCACGGCAACAGAGCGAAACCAGGTGAACTTCCATGGTTGACTCGGATGAAAATAGCGATAGAGACGGCAAGTGCATTGGTCTATCTCCATGCTTCAGGCATCATCCACCGTGACATCAAAACGAGCAATATTCTCCTCGACCACAATTTTCACGTTAAAGTTGCAGATTTTGGACTCTCTCGGCCTTTTCCAACCAATCTATCCCACATCTCGACTGCTCCTCAAGGAACTCCTGGCTATCTTGACCCAGAATATAATGAATGTTACCAATTAACTGATAAAAGCGACGTCTACAGCTTTGGAGTGGTCTTAATGGAGCTTATATCATCCAAGCCTGCCGTTGATATCACAAGGCATAAACAAGAGATTAATTTATCAACCATGGCTATTAATAAGATCCTGAATTGCGCACTGAACGAGCTTGTCGACCCTCATCTTGATTTTGAATCAGACAACAGCATAAGAGAAATGATCAGCTCTTTGGCAGAGTTGGCGTTTCAATGTTTGCAGAGCGTGAAGGATGCAAGGCCATCCATGGCTGATGTTCTACAAGCTTTGCATCACATAGAGAAAGGAGATTGCGGTAAAGAAAAGTCAGTGGACATCGATAATAATGTAGGTGAAGAATTGCTCAAGAATGAACGTTTGAATTTTGCACAGGATACCGGTGATGTGCATTGGTTTAGCGCTTCTGCAACACCAAGTAACAGCCGATAA 1998 42.89 MRFSLSYCCLLLIGWSFRRRLSFCDSREDFSDTCPEFSCGEVNNVSYPFWSGDNYENCGRRGLKLNCHDDDHQYFTMEMNSLDYRVISINTTTHTMKIARSDLYDSRCTRNFTNTILDLSLLNYSPNLRNLTVFYDCTNPSFISNETLSRNRFDCTYNNSDTVNFVFSDESMMENLKSELDSCDNKIIVPAFPESENGAEDIDSAFHGGFAVTYDILGMASTCDTCRQSGGLCLSNDSFPFLCWCRGQPPQPLNKCPAPDIKNVRKKIIIGVCSGLGGVLLMCFVFLIWAYRKNNKYVFSSVVPRSFSSYFSSQSTVDKECIYAGVHLFSYSELEEATNKFDSVNELGDGGFGTVYYGKLRDGRTVAVKRLHENNFKRVEQFRNEVEILSRLRHENLVSLYGCTSRQCNELLLVYEYIPNGTVADHLHGNRAKPGELPWLTRMKIAIETASALVYLHASGIIHRDIKTSNILLDHNFHVKVADFGLSRPFPTNLSHISTAPQGTPGYLDPEYNECYQLTDKSDVYSFGVVLMELISSKPAVDITRHKQEINLSTMAINKILNCALNELVDPHLDFESDNSIREMISSLAELAFQCLQSVKDARPSMADVLQALHHIEKGDCGKEKSVDIDNNVGEELLKNERLNFAQDTGDVHWFSASATPSNSR 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16458801 16463571 - Bpe001465.1 Bpe15g00530 116209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00530 665 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Bpe15g00530 665 Pfam Wall-associated receptor kinase galacturonan-binding 34 100 IPR025287 GO:0030247
Bpe15g00530 665 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe15g00530 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 20 654 - -
Bpe15g00530 665 Gene3D Transferase(Phosphotransferase) domain 1 418 628 - -
Bpe15g00530 665 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe15g00530 665 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe15g00530 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 654 IPR044652 -
Bpe15g00530 665 SUPERFAMILY Protein kinase-like (PK-like) 318 614 IPR011009 -
Bpe15g00530 665 CDD STKc_IRAK 347 613 - -
Bpe15g00530 665 Gene3D Phosphorylase Kinase; domain 1 310 417 - -
Bpe15g00530 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Bpe15g00530 665 Pfam Wall-associated receptor kinase C-terminal 155 247 IPR032872 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00530 - - - jre:109010677 630.943
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00359 Bpe15g00530 CCT
Bpe13g00359 Bpe15g00530 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01393 Bpe-Chr2:17471804 Bpe15g00530 Bpe-Chr15:16458801 5.11E-167 dispersed
Bpe11g01222 Bpe-Chr11:9138134 Bpe15g00530 Bpe-Chr15:16458801 1.33E-162 dispersed
Bpe15g00530 Bpe-Chr15:16458801 Bpe06g00170 Bpe-Chr6:4101894 1.62E-72 dispersed
Bpe02g01680 Bpe-Chr2:19410197 Bpe15g00530 Bpe-Chr15:16458801 1.65E-89 transposed
Bpe13g00359 Bpe-Chr13:11362735 Bpe15g00530 Bpe-Chr15:16458801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63769 PF00069 Pkinase 4.90E-50 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00530 Bpe_Chr15 FPKM 5.781604 5.567475 11.906233 12.064715 27.05794 24.324533 26.548782 0.0 0.0 0.0