Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00534 ATGGAGAATGCGGAAATTGCGGTGATTCAATTCCAGATTTCATCACAGAAGACTGACATTGAGCAAAGCATTGTTGTTTCTGATTATACTCAGATGGATAGGATATTGAAGGAGGAGAGAAATTATATCTTGGATATGATTAAGATGATCAGGGCCACTGGATGTAATGTGTTGTTAATTCAGAAGATCATTTTGAGAGATGCATTGACAGATTTATCAATGCATTACCTTGCGAAAGCTAAGATATTGGTGATTAAAGACGTGGAGCCAGATGACATTGAGTTCATTACCAAGACTCTCAACTGTTTGCCAATAGCAAACATTGAGCATTTCTGTGCTGAGAAGTTGGGTTATGCTGATCTGGTTGAAGAGGTTTCACTTGGAGATGGAAAGATTGTGAAAATTACAGGGATTAAGGATATGGGGAGGACCACTACTGTGGTTTTCCGTGGATCAAATCAGTTGGTAATGGATGAGGCTGACCGTAGCTTGCACGATGCATTGTGTGTTGTTAGGTGCTTGGTGAGTAAAAGGTTTTTGATTGCTGGTGGTGGTGCACCAGAGATTGAGCTGTCTAGACAGCTAGGTGCATGGGCAAAAGTGCTGCATGGGATGGAGGGTTATTGTGTCCGTTCATTTGCTGAGGCTCTAGAAGTTATTCCGTATACACTGGCTGAAAATGCAGGATTAAACCCAATCGCAATTGTTACAGAGCTGAGGAATTGTCATGCACAGGGTGAGATTAATGCTGGGATTAATGTGAGGAAAGGGCTGATAACAAACATTTTGGAAGAGAATGTGGTGCAGCCACTACTTGTGAGCAGTAGTGCTATTACCCTTGCAACTGAATGCGTGCGAATGATCTTGAAGATTGATGACATTGTCACGGTGAGATAG 897 42.03 MENAEIAVIQFQISSQKTDIEQSIVVSDYTQMDRILKEERNYILDMIKMIRATGCNVLLIQKIILRDALTDLSMHYLAKAKILVIKDVEPDDIEFITKTLNCLPIANIEHFCAEKLGYADLVEEVSLGDGKIVKITGIKDMGRTTTVVFRGSNQLVMDEADRSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRSFAEALEVIPYTLAENAGLNPIAIVTELRNCHAQGEINAGINVRKGLITNILEENVVQPLLVSSSAITLATECVRMILKIDDIVTVR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16493274 16494170 - Bpe001469.1 Bpe15g00534 116213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00534 298 Gene3D - 143 178 IPR027410 -
Bpe15g00534 298 PANTHER CHAPERONIN 1 296 IPR017998 GO:0140662
Bpe15g00534 298 Gene3D - 179 295 IPR027413 -
Bpe15g00534 298 PRINTS Tailless complex polypeptide 1 (chaperone) signature 180 192 IPR017998 GO:0140662
Bpe15g00534 298 PRINTS Tailless complex polypeptide 1 (chaperone) signature 146 168 IPR017998 GO:0140662
Bpe15g00534 298 SUPERFAMILY GroEL-intermediate domain like 144 176 IPR027410 -
Bpe15g00534 298 SUPERFAMILY GroEL apical domain-like 1 151 IPR027409 -
Bpe15g00534 298 SUPERFAMILY GroEL equatorial domain-like 178 296 IPR027413 -
Bpe15g00534 298 Pfam TCP-1/cpn60 chaperonin family 1 296 IPR002423 GO:0005524
Bpe15g00534 298 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 1 296 - -
Bpe15g00534 298 Gene3D GroEL 1 142 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00534 K09496 CCT4; T-complex protein 1 subunit delta - twl:120016594 532.332
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00366 Bpe15g00534 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00534 Bpe-Chr15:16493274 Bpe02g00326 Bpe-Chr2:2116700 8.05E-39 dispersed
Bpe13g00366 Bpe-Chr13:11423975 Bpe15g00534 Bpe-Chr15:16493274 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008900 2 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00534 Bpe_Chr15 FPKM 7.842105 6.894351 9.987094 9.176064 8.055837 9.840329 10.470224 12.370433 11.965028 16.138742