Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00544 AAACAGAAACCGCCCTACCCATCTTCGATGGCGGCTTTCCGCTTTCCTTATTGCCGCCATTGTTACAGATCTTCCACGGCGTTAACTTCTCCCCCTTCTCTCTCTTTTCCTGGCTGGCGAATTTTATCGGCACCCAGTATCGGAGTTTCCTCGATGACTCCTTGCTCGGCTTCCAGCTTGACGATGGAGAACAGCAACGCTAAGTCTCCGCAGCAGCCGTGGCTCATTGTTGGCCTCGGCAATCCCGGAAAGAAATACGACTGCACCCGCCATAATGTTCAATTTTCTCAGGTGGGTTTTGCAATGGTGGACACTATAGCTGAAGCTGAAGGGATTTCCACGAGCACTGTTTCTTTTAAAGCTATACTTGGAAAAGGTTCTGTTGGTGATACTCCAGTAATCCTTGCCAAACCAAAAACTTTCATGAACTCAAGTGGTGAGTCTGTTGGTGCAATAGTTTCGTATTATAAAATCCCATTGAAGCAAGTATTAGTGGTTTTTGATGACTTAGATTTACCATTTGGTAAATTACGGCTTTTGCCAAAAGGAGGACATGGAGGACATAATGGAATGAGGAGTATCATTGCACACTTGAAAGATAGCCGTGATTTTCCTCGTCTGAAAATTGGCATTGGTCGACCTCCTGGAAAAATGGATCCCAGCAACTTTGTCCTTCGCCCCTTCAATAGACACGAAGAGGAAGAGTTGGATTTTACATTTCGACACGGACTGGAAGCTGTCCGAATTCTTTTGGTGGAGGGATTCAATAAAAGTGCAACATTTGTGAACAGTGCCAAATGCTTGGAACAACATGGTTAG 819 45.18 KQKPPYPSSMAAFRFPYCRHCYRSSTALTSPPSLSFPGWRILSAPSIGVSSMTPCSASSLTMENSNAKSPQQPWLIVGLGNPGKKYDCTRHNVQFSQVGFAMVDTIAEAEGISTSTVSFKAILGKGSVGDTPVILAKPKTFMNSSGESVGAIVSYYKIPLKQVLVVFDDLDLPFGKLRLLPKGGHGGHNGMRSIIAHLKDSRDFPRLKIGIGRPPGKMDPSNFVLRPFNRHEEEELDFTFRHGLEAVRILLVEGFNKSATFVNSAKCLEQHG 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16541010 16543684 + Bpe001479.1 Bpe15g00544 116223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00544 272 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 42 266 - -
Bpe15g00544 272 Hamap Peptidyl-tRNA hydrolase [pth]. 73 256 IPR001328 GO:0004045
Bpe15g00544 272 Gene3D - 58 266 IPR036416 GO:0004045
Bpe15g00544 272 PANTHER PEPTIDYL-TRNA HYDROLASE 42 266 IPR001328 GO:0004045
Bpe15g00544 272 SUPERFAMILY Peptidyl-tRNA hydrolase-like 73 263 IPR036416 GO:0004045
Bpe15g00544 272 TIGRFAM pth: aminoacyl-tRNA hydrolase 75 260 IPR001328 GO:0004045
Bpe15g00544 272 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 184 194 IPR018171 GO:0004045
Bpe15g00544 272 Pfam Peptidyl-tRNA hydrolase 75 258 IPR001328 GO:0004045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00544 K01056 PTH1, PTRH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] - jre:109010743 348.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00379 Bpe15g00544 CCT
Bpe13g00341 Bpe15g00544 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00341 Bpe-Chr13:11248632 Bpe15g00544 Bpe-Chr15:16541010 5.39E-138 wgd
Bpe14g00108 Bpe-Chr14:1541567 Bpe15g00544 Bpe-Chr15:16541010 1.41E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
Vvi17g347 . Blo16g00141 . . . Bpe13g00341 Bma06g00002 . . Cmo18g00031 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00169 Csa01g00653 Chy12g01448 Cme12g01888 . . . Bda14g00913 . Bpe15g00544 Bma03g00889 . . . . . Cma18g00036 . Car18g00030 Cpe09g01144 . Bhi08g01217 Tan05g2282 . Lac10g0222 . . . Cla04g01104 Cam04g1157 Cec01g1667 Cco01g1713 Clacu04g1184 Cmu04g1164 Cre01g1462 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004590 1 5 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00544 Bpe_Chr15 FPKM 5.57197 6.40501 7.402906 7.11632 3.856737 3.981164 5.280665 4.32148 4.382007 7.071224