Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00555 ATGGCGATGAAGATGCATATCCGAGCTTCTGCCACCCCTAACCCCAACCTTCATCCTCCTTTGTCCTCCATTGTTGGAGCCAGAGCTTTTTCAAATACCCATTGGAAGCCTGCCTCCGTTGCATTGCCTACTTCAACCTCCATTTCCCTCTTGACCCTTTTCTCTCTCCCTTTTGAAGCTAGGGCTCTTAATAAAGAACAGATCGTCTCTACTATTACTGAAGTGGAGAAGACGATTGATGCTGCTCAGGAAGTGGGCTCAAGTATCTTGGATTCCACACAGCGTATCGTTGAATCTGTGGGAAGTGCTCTAAAGCCTGGGGTAGACACGGCGCTTCCGATAGTACAGCGTGCTGGAGAACAGGCCTTAAAGGTTGCTTCTCCGGCCATTTCGGAGGCTTCAAAGAAAGCTCAAGAGGCAATTCAGAGCTCTGGCATTGACACAGAGCCTGTTCTCAATGCTGCTAAGGTTGCAGCTCAGCAAACTGGTAAAGTGATTGAAGTGGCAAAGCCTGTAGCTTCTTCCACTTTTAAGACCATCATAACCACCGATCCTCTTGTACTTGCCGAAGCGGCCGGTGCATTGTTTTTTGCTTATCTCCTCTTTCCTCCCATTTGGTCGGTCATCGCTTTCAATCTTCGTGGGTTTAAAGGTGAACTTACTCCTGCTCAAGCCCTTGATCTAGTATCGACTAAAAACCACCTTTTGGTTGACATAAGATCGGAGAAAGATAAGGAGAAAGCCGGGATTCCTCGTCTCCCCGCAAGAGTGAAGAACAGTATGATTGCAATTCCCTTGGAAGAACTACCGAGCAAGTTAAAAGGAGCAGTCCGCGATTTGAAGAAAGTAGAAGCCGAAATCGGGGCTATAAAGATTTCATATCTCAAGAAAATCAACAAAGGCTCCCACATCATCATCCTTGATTCGTACTCAGACTTGGCTAAAACAGTGGCAAAAGCATTAACAAGCTTTGGGTTTAAGAATACTTGGATTGTGGCTGATGGATTTTCGGGGAGGAATGGTTGGCTGCAAAGTCGTTTAGGAACCGACACATTTAACTTCTCTGTCGCGGAGCTCATTTCACCGTCACAAGTAGTTCCCACCTCGACCCGACGATTCGGCACAAGAAGCTTAACTGCTCGATCCGGGCAAAAGTTACTACCGGGGGGCGATTAA 1176 47.11 MAMKMHIRASATPNPNLHPPLSSIVGARAFSNTHWKPASVALPTSTSISLLTLFSLPFEARALNKEQIVSTITEVEKTIDAAQEVGSSILDSTQRIVESVGSALKPGVDTALPIVQRAGEQALKVASPAISEASKKAQEAIQSSGIDTEPVLNAAKVAAQQTGKVIEVAKPVASSTFKTIITTDPLVLAEAAGALFFAYLLFPPIWSVIAFNLRGFKGELTPAQALDLVSTKNHLLVDIRSEKDKEKAGIPRLPARVKNSMIAIPLEELPSKLKGAVRDLKKVEAEIGAIKISYLKKINKGSHIIILDSYSDLAKTVAKALTSFGFKNTWIVADGFSGRNGWLQSRLGTDTFNFSVAELISPSQVVPTSTRRFGTRSLTARSGQKLLPGGD 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16607104 16609357 + Bpe001490.1 Bpe15g00555 116234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00555 391 Pfam Rhodanese-like domain 222 337 IPR001763 -
Bpe15g00555 391 SMART rhod_4 220 348 IPR001763 -
Bpe15g00555 391 Gene3D - 217 356 IPR036873 -
Bpe15g00555 391 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 5 389 - -
Bpe15g00555 391 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 196 338 IPR036873 -
Bpe15g00555 391 CDD RHOD 224 338 - -
Bpe15g00555 391 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 5 389 IPR044690 GO:0009704|GO:0071277|GO:0090333
Bpe15g00555 391 ProSiteProfiles Rhodanese domain profile. 230 351 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00555 - - - qsu:112038066 507.294
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00555 . 36 309 Sulfurtransferasese/Rhodanese AT5G23060 62.6 1.9e-87 319.3
Bpe13g00981 . 444 816 Sulfurtransferasese/Rhodanese AT4G01050 59.0 5.0e-117 418.3
Bpe02g01838 . 6 615 Sulfurtransferasese/Rhodanese AT1G09280 63.6 2.3e-222 768.5
Bpe04g01938 . 100 474 Sulfurtransferasese/Rhodanese AT2G40760 70.8 1.1e-150 530.0
Bpe12g00626 . 81 441 Sulfurtransferasese/Rhodanese AT1G17850 64.5 2.7e-138 488.8
Bpe04g00562 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 75.0 9.8e-84 306.6
Bpe04g01274 . 22 221 Sulfurtransferasese/Rhodanese AT3G08920 56.7 2.7e-64 241.9
Bpe07g00865 CCT,ECH 122 332 Sulfurtransferasese/Rhodanese AT4G24750 64.5 5.0e-77 284.6
Bpe08g00293 . 17 295 Sulfurtransferasese/Rhodanese AT5G19370 56.5 6.9e-82 300.8
Bpe09g00160 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.3 2.8e-154 541.6
Bpe07g01026 . 37 251 Sulfurtransferasese/Rhodanese AT4G27700 68.8 3.5e-78 288.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00555 Bpe_Chr15 FPKM 0.254187 0.32872 0.144124 0.0 0.100595 0.0 0.173225 0.0 0.0 0.0