Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00559 ATGGCTCAAGATGCTTCTCAAGGTGCTGAATCACCCCGACCGCGTACTGGTCTCTTGCGAGACCAGGTTCAATTGGTTAAGAAAAAGGACTCAGACCGCTATGAGATTGTTCCAATCAAAGATTCCCTTTCGTTTGAAAAAGGTTTTTATATTGTAATCCGTGCATGCCAATTCTTGGCCCAAAAGAATGAGGGGATAACATTTGTAGGAGTAGCAGGTCCCTCTGGAGCTGGGAAGACTGTGTTTACTGACAAGGTGCTCAATTTCATGCCAAGCATAGCTGTCATTACGATGGATAATTACAATGATGTTAGTCGTATCATTGATGGCAATTTTGATGACCCGCGCTTAGCTGATTACGACACCTTGCTTGAAAATATAAATGGTCTAAAAGCTGGGAAATCTGTTCAGGTTCCTATTTATGATTTCAAGACTAGCTCTCGCATAGGTTACAGGACAGTTGAAGTTCCCAGTTCTCGAATTGTGATTATCGAGGGCATTTATGCTTTAAGTGAAAAATTGCGGCCTTTGCTAGATCTTCGTGTATCAATTACCGGTGGAGTTCACTTTGATCTCGTCAAACGTGTTTTACGTGATATTCAACGTGCAGGACAAGAACCTGAAGAAATAATTCATCAAATTTCGGAAACAGTCAACCAAATTTTTAAGCTACTTTTTCTCTGTACAATCTGGATGCAGGTATATCCTATGTACAAAGCATTCATTGAACCTGATCTTCAAACAGCACACATAAAAATCACCAACAAGTTTAATCCATTTACAGGATTCCAAAATCCCACTTATATTTTGAAGTCAACAAAGGCAGTAACTGTGGATCAAATCAAGGCTGTTATTTTGGATGATCACAAAGAAACTACAGAGCAAACCTATGACATTTACCTTCTGCCTCCTGGCGAAGATCCTGAAGCATGTCAGTCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGAACTTCAAAATAATGTATTTTATCTGTATAAATATGTTTAGAGAGAGAGACATTAAAATATTCTACATCTATTTGGAGTGGGTTACCGACATCCCATTCATAATATCGCCAAGAATAACTTTTGAGGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTGGGATATACCATTGCAACTATCCTGAAAAGAAGTAGCCATGTCTTCTCTGATGATAGGGTGTGTGTAAAGACAGATTGGTTAGAGCAACTCAATCGTCAATACATTCAGGTGCAAGGAAGAGATCGATCATACGTGAAACATATTGCGGAGCAGCTGGGTTTGGATGGGTTTTACATTCCTAGAACTTACATAGAACAAATTCAGCTGGAGAAACTTGTAAATGATGTTATGGTAAGCCTTTTCCATCTCATTTTTCCAATTAGTTCTTATGCAGGGGTTAACATTGTCGGTTTCCAGGCATTGCCAGATGATTTGAAAACAAAGCTCAGCATTGACGACGAAGTAGCTTCAAGCCCCAAAGAAGCACTTTCCCGAGCTTCTGCAGATAGAAGAACAAAGTATCTCAAGAGTGGAATGTCACAATCATATTCAAATCAGAGGGAAAGAAGCCTTCCCAAGCTGACAAAACTTGCTGTCAACAATAGAAGGTTTGATGGGAGAACCCTTGAATCACCTGCGACGCCCACAAACCAGGGGGTCATCACTCAACTGTCGGAACAAATTTCAACGCTCAATGAGAGAATGGATGAGTTTACGTCTCGTATTGAAGAGCTAAATTCCAAGTTTTCCAACAAAAGAGTGTCAGCCAGCCAACAGAACTTGGCTTTGCATTCTGATGCCTGTAATGGGTCAGGACCTGCTCCATATTTTGTGTCAAACTTGAGCAATGGTTCACTGACTGGATCACTACTTCCCCATTCCACATCTTCCTCTCAATTGGCCAAGGAGTCTGCTTTGGTGGAGGAGATTCTGAACATTGCACGTTCACAGCGGCAAATCATGCATCAAATCGATAGTATGAGCAATATTCTTCGTGAATCTTCTGGTGAGAGGTTACGCCAAGCAAGAACTGGTGGAACAAGCAGAATAGCTGACCTTGACTTACTAGTCACTACCCCGCTTATTCTGACGCTGGCAATAGGTGGTATCGGACTTCTATTGTTCAAGGCTCTAAATTCACACAAGTAA 2178 41.23 MAQDASQGAESPRPRTGLLRDQVQLVKKKDSDRYEIVPIKDSLSFEKGFYIVIRACQFLAQKNEGITFVGVAGPSGAGKTVFTDKVLNFMPSIAVITMDNYNDVSRIIDGNFDDPRLADYDTLLENINGLKAGKSVQVPIYDFKTSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVNQIFKLLFLCTIWMQVYPMYKAFIEPDLQTAHIKITNKFNPFTGFQNPTYILKSTKAVTVDQIKAVILDDHKETTEQTYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFENFKIMYFICINMFRERDIKIFYIYLEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDRVCVKTDWLEQLNRQYIQVQGRDRSYVKHIAEQLGLDGFYIPRTYIEQIQLEKLVNDVMVSLFHLIFPISSYAGVNIVGFQALPDDLKTKLSIDDEVASSPKEALSRASADRRTKYLKSGMSQSYSNQRERSLPKLTKLAVNNRRFDGRTLESPATPTNQGVITQLSEQISTLNERMDEFTSRIEELNSKFSNKRVSASQQNLALHSDACNGSGPAPYFVSNLSNGSLTGSLLPHSTSSSQLAKESALVEEILNIARSQRQIMHQIDSMSNILRESSGERLRQARTGGTSRIADLDLLVTTPLILTLAIGGIGLLLFKALNSHK 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16617569 16622248 - Bpe001493.3 Bpe15g00559 116238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00559 725 PANTHER URIDINE KINASE 6 461 - -
Bpe15g00559 725 PANTHER URIDINE KINASE 482 711 - -
Bpe15g00559 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 255 IPR027417 -
Bpe15g00559 725 Gene3D - 67 265 IPR027417 -
Bpe15g00559 725 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 482 711 - -
Bpe15g00559 725 ProSiteProfiles CYTH domain profile. 262 452 IPR023577 -
Bpe15g00559 725 SUPERFAMILY CYTH-like phosphatases 277 449 IPR033469 -
Bpe15g00559 725 Pfam CYTH domain 285 439 IPR023577 -
Bpe15g00559 725 PRINTS Uridine kinase signature 189 199 - -
Bpe15g00559 725 PRINTS Uridine kinase signature 133 148 - -
Bpe15g00559 725 PRINTS Uridine kinase signature 66 83 - -
Bpe15g00559 725 Pfam Phosphoribulokinase / Uridine kinase family 68 216 IPR006083 GO:0005524|GO:0016301
Bpe15g00559 725 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 461 - -
Bpe15g00559 725 CDD UMPK_like 68 256 - -
Bpe15g00559 725 Coils Coil 564 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00559 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - zju:107418915 1049.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00995 Bpe-Chr10:15358102 Bpe15g00559 Bpe-Chr15:16617569 1.67E-41 dispersed
Bpe14g00215 Bpe-Chr14:2387668 Bpe15g00559 Bpe-Chr15:16617569 9.09E-13 dispersed
Bpe15g00559 Bpe-Chr15:16617569 Bpe08g01082 Bpe-Chr8:12931670 7.46E-09 dispersed
Bpe10g00920 Bpe-Chr10:14812954 Bpe15g00559 Bpe-Chr15:16617569 0 wgd
Bpe11g01674 Bpe-Chr11:12988719 Bpe15g00559 Bpe-Chr15:16617569 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00559 Bpe_Chr15 FPKM 11.828259 14.381615 14.268079 14.363297 9.672474 8.641708 8.178198 4.148183 4.347578 4.280094