Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00567 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAATATCAATCGGCAAGTGACGTTTTCGAAGAGAAGGTCTGGGTTGCTGAAGAAAGCCCATGAAATTTCTGTTTTGTGCGACTCGGAGGTTGCTTTGATCGTCTTTTCGAACAAGGGGAAGTTGTTCGAGTACTCCACTAATTCCAGCATGGAAAAGATCATCGAACGGTACGAGAGGTGTACATTCAGAGAACCTCAGGAAAATTTGACGATGCAACAAGTAAAGCATAGAGATAAGCTGGAGATTCTGCAAAGAACTCAAAGCAATATTATGGGAGAAAATCTCGAAGCATTAAGCATCAAAGAGCTTCAAAACTTGGAGCAACAGGTTGATTCTGCTCTGAGACACGTAAGAAGAAGAAAGAACCAACTCATGCTAGACTCTATATCACAGCTTCAGAAAAAGGATAAGGCATTGGAGGAGCAGAATAACTCTCTGCTGAAGGAGGTTAAGGAGAAGGAGATATCACTTCACGAACGGTCACAGAATCATGGGATGAGCTCATCCATCGATCTTCCTCAGCTATTTCATTTCGTAGGTCTCGGCGGATGTAACAATGGAGGTGGAGGAGGAGCGAATCGACAAATATCGAACACGGCCCTGCCTCCATGGATGCTTCCTTGTTCCAAAGAGTAA 675 44.44 MGRGRVQLKRIENNINRQVTFSKRRSGLLKKAHEISVLCDSEVALIVFSNKGKLFEYSTNSSMEKIIERYERCTFREPQENLTMQQVKHRDKLEILQRTQSNIMGENLEALSIKELQNLEQQVDSALRHVRRRKNQLMLDSISQLQKKDKALEEQNNSLLKEVKEKEISLHERSQNHGMSSSIDLPQLFHFVGLGGCNNGGGGGANRQISNTALPPWMLPCSKE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16678416 16689984 - Bpe001501.1 Bpe15g00567 116246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00567 224 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bpe15g00567 224 Pfam K-box region 81 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe15g00567 224 ProSiteProfiles K-box domain profile. 79 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe15g00567 224 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 1 1 176 - -
Bpe15g00567 224 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bpe15g00567 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 Coils Coil 142 169 - -
Bpe15g00567 224 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Bpe15g00567 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 Coils Coil 116 136 - -
Bpe15g00567 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe15g00567 224 PANTHER MADS BOX PROTEIN 1 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00882 Bpe-Chr4:5868457 Bpe15g00567 Bpe-Chr15:16678416 1.05E-37 dispersed
Bpe10g00142 Bpe-Chr10:2896564 Bpe15g00567 Bpe-Chr15:16678416 7.46E-38 dispersed
Bpe13g01368 Bpe-Chr13:18936151 Bpe15g00567 Bpe-Chr15:16678416 1.09E-57 dispersed
Bpe10g00914 Bpe-Chr10:14781063 Bpe15g00567 Bpe-Chr15:16678416 1.11E-58 wgd
Bpe11g01669 Bpe-Chr11:12879739 Bpe15g00567 Bpe-Chr15:16678416 1.45E-68 wgd
Bpe14g00138 Bpe-Chr14:1858128 Bpe15g00567 Bpe-Chr15:16678416 1.09E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22589 PF01486 K-box 1.40E-20 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00567 K09264 - csin:114262929 251.906