Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00568 ATGGGAAGAGGGAGAGTAGAGCTGAAGAGGATAGAGAACAAAGTTAACCGGCAAGTGACATTTGCCAAGAGAAGAAATGGGTTGCTCAAAAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGGTCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTTTGTAGCAGCTCTAGCATGATGAAAACACTTGAAAAATATCAAAGTTGCATTTATGGTAGCAGACAAGGTAGTGGAATACTCAATGAAAACCAGGAGAACAATCTCGATGGATATTTGAACTTAAAAGCTACGGTTGAGGACCTACAGCGTGCTCAGAGAAACATTCTTGGGGAAGATCTGGTCTATTTAAATAAGACCGAAATCGAGCAACTTGAGGATCAATTAGAGGTATCCTTGATGCGTGTCAGGTCCAAAAAGGTGATACGTTTTTGCATACGCACATCCGTATACATATACACATATACATGA 480 40.62 MGRGRVELKRIENKVNRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSSSSMMKTLEKYQSCIYGSRQGSGILNENQENNLDGYLNLKATVEDLQRAQRNILGEDLVYLNKTEIEQLEDQLEVSLMRVRSKKVIRFCIRTSVYIYTYT 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16692832 16695877 - Bpe001502.1 Bpe15g00568 116247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00568 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Bpe15g00568 159 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 144 - -
Bpe15g00568 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bpe15g00568 159 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 144 - -
Bpe15g00568 159 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Bpe15g00568 159 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe15g00568 159 ProSiteProfiles K-box domain profile. 88 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe15g00568 159 Pfam K-box region 88 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00797 Bpe-Chr14:6020677 Bpe15g00568 Bpe-Chr15:16692832 1.48E-60 dispersed
Bpe15g00568 Bpe-Chr15:16692832 Bpe10g00914 Bpe-Chr10:14781063 7.52E-47 dispersed
Bpe15g00568 Bpe-Chr15:16692832 Bpe14g00138 Bpe-Chr14:1858128 1.48E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22590 PF01486 K-box 1.20E-12 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00568 K09264 K09260 han:110917628 205.682