Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00571 ACTTTTGAGATGCATAATCATGGTCCTCACTTTTTGCAGGCTCCTCACAAGCCTGTGCCACCTTCATATCAGCAGCTCCCAGTCGCCTCACGCCCACATTTTCGATCAGTTCTTCCTCCTCAATCTCTACCCCCACCACCCTCTCTTCCTCCACCTCCTAGTCATGTTTACCGGCATGGTCCTCCTGGTGCTCGCAGTGTTATCCCTCAAGCTCCTTTCTTGCAAGTTCAATCTCAGGGGATAGCGAATATTAATCAATCTTATTTTCATACGCAACCTCCACTTCATGGAAGCACCTTGTTCCCGCCAGGTTACTTAAATGTGAAGCAGAATTCTTTAGCTCCTCCTCAATCCGGAGTCCACATAGTGCATAATGCACCACATCCCAGAGCCTCTTTTATTGGTAATCCTCCTCCAGAATTTATTCATCCAGCACCTTTTAATGTATTACCTCCTCATCATACTTCACCAGTGGAAACAGTATACAGAGCTCCCGTGAATGTGGTTCCACAACATGGTCATGGTGGCATACAAGCCCTTCAGAACCTTCCTCTACCACCATATCCACCACAACCCCCAGCAACTTTTAGTTTTTCTGCTCCTGCTCCTGCTCCCACTACATCTTCTGATATAGAGAATTCAGCTTTTGGAGATTCAGTTATTCCTTCTGTAACTCCCCCACCACCATCCTCTCCTCCACCTCTACCACCCTCTCCCCCGCCCCCGCCCTCCATTTCTCTTCCATCATCATTTTCAGTGGCCAGCGATTCGGTTCCCAACGTGACATGCATATCTGTTGTTGATCCGGGTTCTCACAGTTTTCCTGGAAATTCAGTGAGGACCCTAGAGTTCACTGATGACGTCATATCTCCCAATCAGGTCAGATATAATGGACCAATGGGCAATCATCTTAATCAAAAAGGTGAAAGTGGTTGTGTTCCTGTGAGTTCTATGATGAATGATGAGTTTTCATCTGATAGAAGTGAGATATTGGACCGTCCTTCACCTCCATCTAAACCAACAGAACAAAACAATGTGAAGGTGGAAACATTATGCCAAAGTATTGCCGAGAATGTTCTTGTTATTGAAAAGATGGCTTGTCAGAATGAGTCTCCAAACCTTTCATTTGGTGGTGAACCAGGAAGTGGGGATGCAATTACAGATGAGTGTTCATCGAGAGCTTCACAAGAGTGCAACCAGCCAAATTGTTTGATTGTTTCAGCTGGGAACAATACAGCTGCTGATTCTGACATGGAGATGGAAGACGATATCACCCTGGCTCTTAAAGAACAAGGACTAATTGAGTCAATTCAAGTTATAGATCATGAATCCATGGGATACGGCGGAAAAGAACAGGTACAAGGATCACATAGTCCTTCCACATGCCGCGCGGATAATGGTGTCTCCTATGAGAGGGTTTCTTGTTCTAGTTCCTTGACTCGGGGGAAACAAGAAGGTAGGAATTCTGATCCATATTTCACATTGTTGAACAAATGTCTGATATTTGAAAACAATGTTAATAAAGTGAAGGCTGATGAGAATTATATGACTTGGTATCTTACTTATGCAGCTGTTGAAGCTGAAGATGCTGATAAGTCTAGTCAACTAATTAAAAGTAGCAGTCCATTCAGGCTAATTCAGGTCTATGCTTCTGATGATGATTCAGAAAATGACAATGAGCCTTGCAACAGGAAAGTTAGTCCTATGGCAGCATTGCCAATTGTTGCCGCTTCTGGTGCGCTGTCTAAAGTAACTACTATGAATAATTTCACCAATATGAAAATAAAAAATTCAAACTGGGATGTAGAAGAAATCGATCCTCTCCCAGAATCATTGTTATCTGACCAGGATTCTGAGGTTTTAACTAAGCATCGGAGAGAAGCTAATAAAACAGGTGAAGCAAGTGAGATAAAGGTTGATTATGGGGGAGGGCATCAAACATCTGTTTGTGGTAATATTGCCTATAAAGGTGATAAGTCTGGGAATGATATGGAGGAGAAGAAGGCTAAGCTTGTGACTAGTCCTTTGAAAGTAGATGAATTTGGAAGACTGGTCAGAGAAGGTTTTAGTGATTCTGACTCTGATGATTCAAGCTATATGAGGAGGGATTATAAAAGAGCCCGCAGTCGAAACCGGAGTCGAAGTCATTCTCCTGCAGATAGGAAGAGGAAGCGGAGGAGTCCAAGAAGGAGAAGGGAACGACGCAGTCGGTCTCCATCTCGCAGTTGGTCTCCGAGGATCCAAAGAAACAGAAATAGATCGCCTTTTAGGCGAGGAAGAGAGTTCAGCAGCAAATCAAGGCGGGAAAGAGGTCAAGTTCCAGTATGCTTTGACTTCAATAGAGGTAGGTGCAATCGTGGAGCATCATGTCACTATATGCACCATGAATCAAGCAAGAATATTCGAACAAGGTATAACCGGGGCAAACAGCAGTATACTGATGTTCATCTTACTTCAATCAAGAATCAAAACTCATCAGCGGAACCAGAAGTGTTAGATATTGAGCATAATGAAGTTAAGACTGCAAGTGAGCCACTCTCTCATGATTTGCCTTCTAAGGACGGTGGCATTGATCGGAAAGAACAAGAATACGCAAGAGGTGGTGTTGAAATCAATGTTTTAGATAAGAATAATGGATTAACTGATTTTGATTTACGTAGACATCAGAATTCCGGAGACAGAGCTGGTACTGTTGAGGAAGCTCAAGTGCTACGAGAAAAACATAATGAGGTTTCTTCCGTTGTTCCCTTGGAGGCTGTGGAGCCTTTTCCTTCACTACCAAGTAAAGGAATTTCTCATGAATTTCCACTTGATTTCGATGCCACAAAGCCAGGCGGAGATCCATCACAGGATGGGGTATCTTCGGTTAAATCAGTAATTTTCCCATCACAATCTAATTATGTGGCAAAGCTTGACAATCCTGATTGTGCTTCTCCTCAGAGATTATCTAAAAGTGAGCCTTTTCCTGACAAGATCTCACCTCGTCAGTCTGGGTTTTGCACTAGTTCTTCTATCGAACAGGTTTTATCTCAACAGCCTTCGCCACATTATCCTGCTATGAAAGAGTTCTCTCATCTTACTCGTCCAGCTATTGAATTTTCACATTCTCCCTCTCAACTTCCTCGACCACCACTTCCCCTTCCCCAAAGTGCAAGTGCCACAAATGTGCCACAGCTGCCAAGGGATTATACCCCGATGCCTCAGGCGTCTTTACCTTTTCAATTTACTCAGACTGAAAATTTTGGATATCCTCAAGTTTCATCTTTCAACCAGCATTCAGAAACCTCTGGGTTGCCTAGTTCCTCTTGGATCAGGCCACAACCTCATCAACCATTGTATGATTCGACTCCAAATGCAGGAACATCTAATTATTGTACTTCTTTCCAGTTGAAGAATGCCTTCCTTCCAATGCCAGAACCTCAAAGGCCTTTTTCAAACATGAGTGATTTTCCTGGTAAGCCTCCAGGCGTGGATTACCCACTTAGCCTATCAATTGGTGGCCTTAGTCTCAAGAGAGAAGAACATTTAATGCAGAATGCTGAGGCTTTAGATTCGTCAAGTCTTTTGGCTCAGAGAAACTTGAACCCAGAATGTAGAACTCTTTCACATGAATTATTGGCGGACAAAATGCAATATTCTTTTGACAAAAACTTTCATTCTGGTGAGTTATGGAAATCGTCCTCCCAAATTCATCCTAATTCAGAGTTTCAACCATCAAGGTTCAATCTGCAAGTTGCTGCAGATGGCAGTCAGTTGGAATTATCTGAGGTTGGTTCTGTTTCTCTACCCTTTCCAACTTCTTTTCCTGATTTTGTGGGATCAAGATTTCCATCTCATCACAATCCTTATGCTTCTACGTTCGAGAAGCCACTTCCTTTTAACTTTAGTACTGGCGTTTGGAAGCAGAGAGATGACACACCCAGCCGTAATAAAAGTTGTACTGACTTTAGTTTGAATGTTCAAGTTGGGGAGCAAGACTTTGCCAGTGTTGGATCTAAACAAACTACTGCTTTTCCCTCTTCAACTACAGCTATTGGGCAGGTTCTGCATAAGTCAGGCACTGACCAGTATGATCCACTTCTTGACTGCATTGAGCCATCTTCTTCACTCAGGAAATCAAATATTGTCAAAGTGAGAGAACAAACCGGTGACTCTGACATCATAATGCGATCCAGTCGTTTGCATAAACCGTTGTATTTTGAAGAGAACGTGGAGGCTGGCGCTGATGCTTCATCCACATCAAGAAATGACGAATTTGGAGAGAGAGCAGATGCAGAAGTAGGTGCTGTGGAGAACCAGAGCCAAGGTGAAGCAAATTTGACTGGTGGAGAAATTGAAATCGATCAGAGTAAGTCTGAAGGGAAGAAAAAGAAGAGCAAAAGCTTTAGATCAACAAAGCTTTTTAAGATTTCCATTGCAAATTTTGTAAAGGAGGTTCTCAAGCCATCTTGGAGGCAAGGTAACATGAGTGAAGAAGCTTTTAAGACTATTGTTAAGAAGAGTGTGGAAAAGGTTGCAGGAGCTATGAAGAGCCATCATATACCTAAGTCCCAGGCCAAAATAAATCGTTACATTGACTCGTCACAGCGAAAACTCATGAAGCTTGTTATGGTAATTCTTCTTTTTTTTATTCCATAG 4638 42.73 TFEMHNHGPHFLQAPHKPVPPSYQQLPVASRPHFRSVLPPQSLPPPPSLPPPPSHVYRHGPPGARSVIPQAPFLQVQSQGIANINQSYFHTQPPLHGSTLFPPGYLNVKQNSLAPPQSGVHIVHNAPHPRASFIGNPPPEFIHPAPFNVLPPHHTSPVETVYRAPVNVVPQHGHGGIQALQNLPLPPYPPQPPATFSFSAPAPAPTTSSDIENSAFGDSVIPSVTPPPPSSPPPLPPSPPPPPSISLPSSFSVASDSVPNVTCISVVDPGSHSFPGNSVRTLEFTDDVISPNQVRYNGPMGNHLNQKGESGCVPVSSMMNDEFSSDRSEILDRPSPPSKPTEQNNVKVETLCQSIAENVLVIEKMACQNESPNLSFGGEPGSGDAITDECSSRASQECNQPNCLIVSAGNNTAADSDMEMEDDITLALKEQGLIESIQVIDHESMGYGGKEQVQGSHSPSTCRADNGVSYERVSCSSSLTRGKQEGRNSDPYFTLLNKCLIFENNVNKVKADENYMTWYLTYAAVEAEDADKSSQLIKSSSPFRLIQVYASDDDSENDNEPCNRKVSPMAALPIVAASGALSKVTTMNNFTNMKIKNSNWDVEEIDPLPESLLSDQDSEVLTKHRREANKTGEASEIKVDYGGGHQTSVCGNIAYKGDKSGNDMEEKKAKLVTSPLKVDEFGRLVREGFSDSDSDDSSYMRRDYKRARSRNRSRSHSPADRKRKRRSPRRRRERRSRSPSRSWSPRIQRNRNRSPFRRGREFSSKSRRERGQVPVCFDFNRGRCNRGASCHYMHHESSKNIRTRYNRGKQQYTDVHLTSIKNQNSSAEPEVLDIEHNEVKTASEPLSHDLPSKDGGIDRKEQEYARGGVEINVLDKNNGLTDFDLRRHQNSGDRAGTVEEAQVLREKHNEVSSVVPLEAVEPFPSLPSKGISHEFPLDFDATKPGGDPSQDGVSSVKSVIFPSQSNYVAKLDNPDCASPQRLSKSEPFPDKISPRQSGFCTSSSIEQVLSQQPSPHYPAMKEFSHLTRPAIEFSHSPSQLPRPPLPLPQSASATNVPQLPRDYTPMPQASLPFQFTQTENFGYPQVSSFNQHSETSGLPSSSWIRPQPHQPLYDSTPNAGTSNYCTSFQLKNAFLPMPEPQRPFSNMSDFPGKPPGVDYPLSLSIGGLSLKREEHLMQNAEALDSSSLLAQRNLNPECRTLSHELLADKMQYSFDKNFHSGELWKSSSQIHPNSEFQPSRFNLQVAADGSQLELSEVGSVSLPFPTSFPDFVGSRFPSHHNPYASTFEKPLPFNFSTGVWKQRDDTPSRNKSCTDFSLNVQVGEQDFASVGSKQTTAFPSSTTAIGQVLHKSGTDQYDPLLDCIEPSSSLRKSNIVKVREQTGDSDIIMRSSRLHKPLYFEENVEAGADASSTSRNDEFGERADAEVGAVENQSQGEANLTGGEIEIDQSKSEGKKKKSKSFRSTKLFKISIANFVKEVLKPSWRQGNMSEEAFKTIVKKSVEKVAGAMKSHHIPKSQAKINRYIDSSQRKLMKLVMVILLFFIP 1545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16719597 16725091 + Bpe001504.1 Bpe15g00571 116250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00571 1545 Gene3D - 752 828 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 705 737 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 200 220 - -
Bpe15g00571 1545 ProSiteProfiles Zinc finger C3H1-type profile. 770 797 IPR000571 GO:0046872
Bpe15g00571 1545 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 6 1537 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 1034 1060 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 1426 1458 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 970 998 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 38 58 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 687 704 - -
Bpe15g00571 1545 SMART c3hfinal6 770 796 IPR000571 GO:0046872
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 754 770 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 183 199 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 323 344 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 1084 1118 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 222 247 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 1 64 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 687 770 - -
Bpe15g00571 1545 MobiDBLite consensus disorder prediction 177 252 - -
Bpe15g00571 1545 PANTHER EXPRESSED PROTEIN 6 1537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00571 - - - qsu:112027887 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00253 Bpe-Chr10:9472240 Bpe15g00571 Bpe-Chr15:16719597 3.54E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22592 None None None None Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00571 Bpe_Chr15 FPKM 51.513439 58.087524 63.89426 66.649117 31.168686 28.424337 33.868134 59.664581 57.099907 69.442566