Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00587 ATGGAAGCTAATCAATCGTTTAAGCATTTCTGCAAATTCTGCAACAAAAGGTTCCGCTGTGGTAGATCTTTGGGAGGTCATATGAGGTCTCATTTGACGAATACTGAACCTGAATTCAACACAAACTTGAAGAGCGCAAAGCTTCAAGGTAACAACAATGGCGAAAGCAACTCCAACAACGTGAAATCAATACTTTCCTCCTCTTATTCGGGATACGGTCTCAGAGAAAACCCAAAAAGAAACTCAAAACATGGAAATCGGGATTCAGACAATTCAATTCCAGAAAAGTTTTGCAGAGAATGTGGAAAAGGATTCCAGTCATGGAAGGCTCTGTTTGGCCACATGAAATGTCACTCAGAAAAAGAGAAATCCTCCATTAAAATGGAGGATCCAGAATCGTGGAGCTTTGAGAATCAGAAGATGATCATGGATAGCCAATCTGATACTGAATTTTCAGCTCCAAACAGGAAAAAGAGATCTAGCAGAAGAAGATTAAGGTACTCAAAAACTCCTCCTTCTTCTTCTTCATTTTCCATTGCAAATGCTTCTTCTTCTGCTTCGGAAATCGTTCAAGAACAGGAGGAGATTGCTTTGAGTTTGATTATGCTTTCTAGAGATAGTGGTCACTGGGGTGGGATTAATTCCACTGCTGAATCATCTGACAACAACTCCAATTTTTCCGGAGTTCGGTTTTTCGATCGGAAGAACTTCGTCCAAAGAAAACAGAATGTTGAGCTTGGTGAGATGGATTCTGGGAATCTTGAGTTTCTAGGGAAACAAACAGAATTTAAGAAGATCAGGTTGAAGAAGAAATCTGAGTTTGATGACAGAGTTGGAATGAACACTTCTGATACTAAATTGGGGAAGAACATGATCGATGAACTCGAAAAATGCAGCTCCCTTGAAAATTCCGAACCGAAATTCAGATCGAAAACCCGAAAAATATCAAAGATTCATAACCCAGATTCGGAAAACTGTAAAAATCCCCATAAAAGAAGCAAATTTGAGTGTTCTTCCTGCAGGAAGGTCTTTCACTCATATCAAGCACTAGGGGGTCATAAAGCCAGCCATAGAAAGATCAAAAGCTGCTTCGACTCAACAATGGAGGTCGAAGAGAACAGCATTGAAACCGAAAATGAGAACCGGCTCAATCCTGAAATTAGTGATTTGAAGAACAAGAGAAAAATGCACACATGTCCAACATGCTTCAAGCTGTTTAGTTCAGGCCAAGCCTTGGGTGGCCACAAGAGATCCCACTTGTTTGGATGCTCGGAAAATATGAATAACCAAACCATTGTGATTCGAGAAAAAATCCCAGAAATTCGAGACTTTCTCGACCTTAATCTTCTTCCGGCATCTGTTGATGAAGAGAGCAACAACAGCCTCGTTGCTTCTGTGGATCCATGGTGGGTAAGAGGAATCTATGAAAATGAAAGGCTTCTGAGTTTGATCTCTAATTGA 1461 40.38 MEANQSFKHFCKFCNKRFRCGRSLGGHMRSHLTNTEPEFNTNLKSAKLQGNNNGESNSNNVKSILSSSYSGYGLRENPKRNSKHGNRDSDNSIPEKFCRECGKGFQSWKALFGHMKCHSEKEKSSIKMEDPESWSFENQKMIMDSQSDTEFSAPNRKKRSSRRRLRYSKTPPSSSSFSIANASSSASEIVQEQEEIALSLIMLSRDSGHWGGINSTAESSDNNSNFSGVRFFDRKNFVQRKQNVELGEMDSGNLEFLGKQTEFKKIRLKKKSEFDDRVGMNTSDTKLGKNMIDELEKCSSLENSEPKFRSKTRKISKIHNPDSENCKNPHKRSKFECSSCRKVFHSYQALGGHKASHRKIKSCFDSTMEVEENSIETENENRLNPEISDLKNKRKMHTCPTCFKLFSSGQALGGHKRSHLFGCSENMNNQTIVIREKIPEIRDFLDLNLLPASVDEESNNSLVASVDPWWVRGIYENERLLSLISN 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16823361 16824821 + Bpe001521.1 Bpe15g00587 116266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00587 486 MobiDBLite consensus disorder prediction 69 93 - -
Bpe15g00587 486 Gene3D Classic Zinc Finger 332 419 - -
Bpe15g00587 486 Pfam C2H2-type zinc finger 397 419 - -
Bpe15g00587 486 Pfam C2H2-type zinc finger 98 120 - -
Bpe15g00587 486 Pfam C2H2-type zinc finger 335 359 - -
Bpe15g00587 486 Pfam C2H2-type zinc finger 9 32 - -
Bpe15g00587 486 SMART c2h2final6 335 357 IPR013087 -
Bpe15g00587 486 SMART c2h2final6 397 419 IPR013087 -
Bpe15g00587 486 SMART c2h2final6 96 118 IPR013087 -
Bpe15g00587 486 SMART c2h2final6 9 31 IPR013087 -
Bpe15g00587 486 ProSitePatterns Zinc finger C2H2 type domain signature. 399 419 IPR013087 -
Bpe15g00587 486 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 486 - -
Bpe15g00587 486 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Bpe15g00587 486 SUPERFAMILY beta-beta-alpha zinc fingers 9 118 IPR036236 -
Bpe15g00587 486 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Bpe15g00587 486 ProSitePatterns Zinc finger C2H2 type domain signature. 337 357 IPR013087 -
Bpe15g00587 486 SUPERFAMILY beta-beta-alpha zinc fingers 335 419 IPR036236 -
Bpe15g00587 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Bpe15g00587 486 MobiDBLite consensus disorder prediction 77 93 - -
Bpe15g00587 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Bpe15g00587 486 MobiDBLite consensus disorder prediction 143 180 - -
Bpe15g00587 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 335 362 IPR013087 -
Bpe15g00587 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 397 419 IPR013087 -
Bpe15g00587 486 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00587 - - - jre:108990953 440.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00587 Bpe-Chr15:16823361 Bpe14g01013 Bpe-Chr14:7537298 3.22E-18 dispersed
Bpe13g00305 Bpe-Chr13:10880253 Bpe15g00587 Bpe-Chr15:16823361 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g613 . Blo16g00175 . . . . . . . . . . Car10g00207 Car11g00174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00587 . . . . . . . . . . Cpe18g00770 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002585 2 2 1 2 2 1 4 1 1 1 1 1 4 2 2 4 1 0 4 1 2 2 2 2 2 2 2 4 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22594 PF13912 zf-C2H2_6 1.60E-11 CL0361 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00587 Bpe_Chr15 FPKM 1.725675 2.980662 2.044521 1.795774 0.511989 0.56812 0.256045 5.434923 3.996796 5.525236