Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00596 ATGATAGTTAACGAGACTAATCCCGCCATTGGAGCAAGCTTGAGAGCCCGACAACAGCTCCTTTTCTCTCTTTTACAAAGCTGCAACACCGTTAAACAACTCATCCAAATTCACTCTCAGATAATCGCGAACGGCTTTTCCCAGAAAAACTTCATTCTTGTTAAGCTTTTATCAATCTACGCTTCCTCTGGTTATCTCCGACTCGCTCTCAAAGTTTTTGAAAATATCAACAACCCGAGTACCACTTGCTGGAATCAGATAATCAGAGGCCATGCTCGAAGCGAAACGCCGAGGAAATCGATTGATTTGTACAGCAAAATGGTTGCGGCCGAAGTTGAGGCAGATGGGTTTACTTTTTCGTTTCTTTTGAGTGCGTGTACGAGATCAGGGTCTTTGAAAATAGGTGAAATGGTTCATGGTAGGGTTTTGATGAATGGGTATTATCATTCCAATGTGTTTGTTCGAACCAATTTGGTTAATTTGTACGCAAACAGTGGAGGAGATAGAGGCATCGAAAGTGCACGTAACGTGTTTGACGAAATGCGTGAAAGAAATGTTGTGACTTGGAATTCTCTGTTGGCCGGTTACGTCAGACGGGGCGATGTCGGTGCAGCGGCGAGAACTTTTGATGAGATGCCGGAGAAGAATATCCACTCGTGGACAATAATGGTCACAGGGTGTGCTCAAAATGGAGAGTGGAAGTTAGCTTTATCATTCTTCCATCGGATGAGAAGAAGTTGTTCGGGATTGGATCAGGTGGCGTTATTAGCAGCATTATCAGCTTGTGATGAATTGGGAAACTTAAAGTTAGGAACTTGGATTCATTGGTATGTAGAAATAACATGGGGAAGTAAACATGGGTCTTTGTTGGTATCTTTGAGCAATGCCTTGATACACATGTATTCAAGTTGTGGTGTAATTGACGAAGCATACAAAATATTCAAAATGATGCCTCGGCGAAGCACGGTTTCTTGGACTACCATTATCACAGGATTAGCAAAACAAGGGCGTGGCGAAGAAGCTCTTCAGGTATTTGAGGAAATGTTGGGGTCGGATGAAATAATCCCCGACGAGGCAACTTTTATTGGAGTTCTCTTTGCATGTAGTCATGCAGGGTTAGTTAGTGAAGGTCGTCGAGTTTTTGAATGCATGAAGGAAAGATATAGAATTAGCCCCCAAATTGAGCATTATGGTTGCATGGTTGATATCTTAAGCAGAGCCGGTTTATGGAGTGAAGTATCGAGGCTGATCAGAAGTATGCCCATGAAACCGAACAGTGCAATATGGGGAGCAATACTTGGTGGGTGTAGAATTCACAAAAACGATGAATTTACATCCAACATTGCTAGAAATTTGGTTGTCGAGATAGCTAATGGCCAAATTGTTGGCAAACTTGCGCTCTTGGCCGATGTGTACGCAAACGCTGAACGGTGGCAAGAGGTAGCTATTCTAAGAGAGAAAATTACGAGCTCGAGAAAGCCACCGGGTCGAAGTTGGATACAAATTGATGGAGTTATTCATGATTTTATGGCTGGCGATTGGACCCACAAGGATGTAAATTTAGTTTACGGGATGGTTGATGAGATAACCAGGCAATCCAGAGAGAACAATTACGAGCTAGATATGGTAGAGAAGATTTCGAATGATTGTTGA 1653 42.71 MIVNETNPAIGASLRARQQLLFSLLQSCNTVKQLIQIHSQIIANGFSQKNFILVKLLSIYASSGYLRLALKVFENINNPSTTCWNQIIRGHARSETPRKSIDLYSKMVAAEVEADGFTFSFLLSACTRSGSLKIGEMVHGRVLMNGYYHSNVFVRTNLVNLYANSGGDRGIESARNVFDEMRERNVVTWNSLLAGYVRRGDVGAAARTFDEMPEKNIHSWTIMVTGCAQNGEWKLALSFFHRMRRSCSGLDQVALLAALSACDELGNLKLGTWIHWYVEITWGSKHGSLLVSLSNALIHMYSSCGVIDEAYKIFKMMPRRSTVSWTTIITGLAKQGRGEEALQVFEEMLGSDEIIPDEATFIGVLFACSHAGLVSEGRRVFECMKERYRISPQIEHYGCMVDILSRAGLWSEVSRLIRSMPMKPNSAIWGAILGGCRIHKNDEFTSNIARNLVVEIANGQIVGKLALLADVYANAERWQEVAILREKITSSRKPPGRSWIQIDGVIHDFMAGDWTHKDVNLVYGMVDEITRQSRENNYELDMVEKISNDC 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16889431 16891083 - Bpe001530.1 Bpe15g00596 116275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00596 550 Pfam E motif 446 501 IPR046848 -
Bpe15g00596 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 527 - -
Bpe15g00596 550 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Bpe15g00596 550 TIGRFAM PPR: pentatricopeptide repeat domain 187 217 IPR002885 -
Bpe15g00596 550 TIGRFAM PPR: pentatricopeptide repeat domain 218 246 IPR002885 -
Bpe15g00596 550 PANTHER OS09G0411600 PROTEIN 14 527 - -
Bpe15g00596 550 Gene3D Tetratricopeptide repeat domain 148 285 IPR011990 GO:0005515
Bpe15g00596 550 Pfam PPR repeat family 321 368 IPR002885 -
Bpe15g00596 550 Pfam PPR repeat family 184 217 IPR002885 -
Bpe15g00596 550 Pfam PPR repeat 219 246 IPR002885 -
Bpe15g00596 550 Pfam PPR repeat 83 109 IPR002885 -
Bpe15g00596 550 Pfam PPR repeat 396 421 IPR002885 -
Bpe15g00596 550 Pfam PPR repeat 295 320 IPR002885 -
Bpe15g00596 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Bpe15g00596 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Bpe15g00596 550 Gene3D Tetratricopeptide repeat domain 286 352 IPR011990 GO:0005515
Bpe15g00596 550 Gene3D Tetratricopeptide repeat domain 353 547 IPR011990 GO:0005515
Bpe15g00596 550 Gene3D Tetratricopeptide repeat domain 15 147 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00596 - - - qsu:112023036 684.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00596 Bpe-Chr15:16889431 Bpe15g00418 Bpe-Chr15:15734706 1.30E-118 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014193 0 1 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 2 0 0 1 1 1 1 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00596 Bpe_Chr15 FPKM 79.202751 89.309021 27.597237 26.99016 33.551407 33.865204 34.243614 22.206808 23.484686 22.42906