Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00605 ATGGAAGGAGATCAAGAGCTCCGTCTGCAACACAGCATTCGCCGTCCTACCTTTCCGTTCCAACTTCTCAAAAACAGAGAAGACGAATCCTTTTGCTCTACGTGCCCTTACCCTGATTCTCTACCCATTTCTGCCGATCTTACCTCCTCCGCCGGCCCCTCCATCTCACGTTTTCCGACCACCTGTGCCGAAGAACTCACGAAGAAGCCTCCGATCAAAAAGGTACCCTCCAAAGACCGTCATACCAAGGTCGACGGCCGTGGGCGGAGAATCAGAATGCCCGCTCTCTGTGCAGCTAGGGTTTTTCAGCTCACCCGAGAGCTGGGCCATAAGTCCGACGGTGAAACCATTGAGTGGCTTCTCCAACAAGCGGAGCCATCAGTAATAGCTGCCACGGGAACTGGAACAATTCCAGCAAACTACTCTTCGTTGAACATATCGTTGAGAAGTTCCCGTTCAACCCTTTCGGTACCATCACAGCTCCGATCATCTTCTCATTACAATCCAAACTTCTTGATTCAGCACCAGAGGAAACCTCTCTTTTCCGGGTTTTCGCCGGAGACTATGTCTACCCTTCTGACTTTTCAGTCTGGAAATACAGATGCTTTACTTCAAGCAAAGCAGGAACTGCAAGAAACTCCGTTGGAACAACTGGAGGCCGGAAAAAGTGAAGGGGGAAAACCAAGGCCCGCGGAGAAGGACTTTATGCTGCAGCCATGCACCGGCAACGGCGCTATTCCACCAAGCCAAAATGCTCAAATTCCTGCAAATTTTTGGGTGACTGCAAATAGGAATAATAACCAATTAATGCCAGGCGTTGACAGCACATGGACGACATTTCCTTCTGTAAACAACAACAGGTTTCAGTTCATGAACTTTCCGCCGCCATTTACCCTATTTCCAGGTCAACAATGTGAAGAAGGAAACACCAGCAGCGGCGGAGGTCCAAATTCTTTCAAATTTCCTACCGGAACTGATTTGTCTACGCCACAAATAAGCAGGTCGTGTAGTCACCAATAG 1020 49.12 MEGDQELRLQHSIRRPTFPFQLLKNREDESFCSTCPYPDSLPISADLTSSAGPSISRFPTTCAEELTKKPPIKKVPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSSLNISLRSSRSTLSVPSQLRSSSHYNPNFLIQHQRKPLFSGFSPETMSTLLTFQSGNTDALLQAKQELQETPLEQLEAGKSEGGKPRPAEKDFMLQPCTGNGAIPPSQNAQIPANFWVTANRNNNQLMPGVDSTWTTFPSVNNNRFQFMNFPPPFTLFPGQQCEEGNTSSGGGPNSFKFPTGTDLSTPQISRSCSHQ 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16963063 16964082 + Bpe001539.1 Bpe15g00605 116284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00605 339 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Bpe15g00605 339 MobiDBLite consensus disorder prediction 303 339 - -
Bpe15g00605 339 Pfam TCP family transcription factor 77 193 IPR017887 -
Bpe15g00605 339 PANTHER TRANSCRIPTION FACTOR TCP23 58 317 - -
Bpe15g00605 339 MobiDBLite consensus disorder prediction 214 233 - -
Bpe15g00605 339 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 58 317 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00605 - - - csv:101221049 297.745
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00551 Bpe15g00605 CCT
Bpe12g00551 Bpe15g00605 ECH
Bpe07g00785 Bpe15g00605 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00011 Bpe-Chr12:139554 Bpe15g00605 Bpe-Chr15:16963063 8.60E-40 dispersed
Bpe13g01416 Bpe-Chr13:19402438 Bpe15g00605 Bpe-Chr15:16963063 2.99E-69 dispersed
Bpe14g01350 Bpe-Chr14:10779890 Bpe15g00605 Bpe-Chr15:16963063 7.63E-37 dispersed
Bpe12g00551 Bpe-Chr12:11348752 Bpe15g00605 Bpe-Chr15:16963063 1.21E-110 wgd
Bpe15g00605 Bpe-Chr15:16963063 Bpe07g00785 Bpe-Chr7:14287029 1.20E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22596 PF03634 TCP 3.30E-36 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00605 Bpe_Chr15 FPKM 344.854401 402.06955 325.97229 348.257477 141.149918 102.401825 159.607239 30.143137 38.176655 41.065815