Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00614 ATGGCGAGTGGGAGGGTCTTCAACAGCGGTGGTGGCAGTGGTAGAGCTGTTTCAGCATCTGCTCTATTGCTTAAGAATCAAGCTTCAGAGCCTCTTAATAATTTGCTGATATCTGGGCCTTCCTCTTCTAGTTCTCCATCTTTTCTGGCTCCAATATCCATGGTGAATTTCAAAGATGGTGTAGGAAGAAGTGGGCCAAATAGACTGACGTTCTGCCCATTTGACGAGAAAGAAAATGGGGAGGAGGAACTGGATGAGTTCTATCACCAACCTGAAAAAAAGAGGCGTCTAAGTTCAGGTCAAGTCCAGTTTCTGGAGAAAAGCTTTGAAGTGGACAACAAGCTCGAGCCAGACAGAAAAACTCAGCTGGCGAAAGAAATAGGCCTGCAGCCCCGTCAGGTTGCAATTTGGTTTCAGAACCGCCGCGCTCGCTGGAAGACGAAGCAACTGGAGAAGGATTTCGAGGTCTTGCAATCCAACTACGATAGCCTAAAGGCTGATTATGAGAACCTCCTCAATGAGAAGGATAAGCTAAAGGCTGAGCTGACAATCTATTCAACGCGTTTGAGCTGTTATTCTGCCATTTTTTTTCAGGTTCTCCTCCTCTCAGAAAAGCTTCTTTTCATAGAGAAGGAGAATGTTAACTTGGAACAATCTGAAGAACCGCCACAGAGTGAAAAAGAAAAGGCACTTTCAAAGGACGAAGAAGACTCCAATGGCTTAAATCTAGGCTGTAAGATTGAAGATGTTAGTTTAGTCAAAAGTGATATATTTGATTCAGACAAGTCTGATATATCAAACGAAGAAGAAGATAGCTTGGACAATAGCCTGTTTCCTTCATATATCTTCTCCAAGCCCAGAGATTTCGATTACTCTGACCCGCCGACTAGCTCCTGCAGTTTCGGATTCCATGTCGAAGACAATGCTCTCTGGTCATGGTCTTAG 945 44.23 MASGRVFNSGGGSGRAVSASALLLKNQASEPLNNLLISGPSSSSSPSFLAPISMVNFKDGVGRSGPNRLTFCPFDEKENGEEELDEFYHQPEKKRRLSSGQVQFLEKSFEVDNKLEPDRKTQLAKEIGLQPRQVAIWFQNRRARWKTKQLEKDFEVLQSNYDSLKADYENLLNEKDKLKAELTIYSTRLSCYSAIFFQVLLLSEKLLFIEKENVNLEQSEEPPQSEKEKALSKDEEDSNGLNLGCKIEDVSLVKSDIFDSDKSDISNEEEDSLDNSLFPSYIFSKPRDFDYSDPPTSSCSFGFHVEDNALWSWS 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17020322 17021506 + Bpe001547.1 Bpe15g00614 116293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00614 314 Pfam Homeobox associated leucine zipper 148 182 IPR003106 GO:0006355|GO:0043565
Bpe15g00614 314 MobiDBLite consensus disorder prediction 217 242 - -
Bpe15g00614 314 SUPERFAMILY Homeodomain-like 83 150 IPR009057 -
Bpe15g00614 314 PRINTS Lambda-repressor HTH signature 119 128 IPR000047 GO:0003677
Bpe15g00614 314 PRINTS Lambda-repressor HTH signature 128 144 IPR000047 GO:0003677
Bpe15g00614 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 46 312 - -
Bpe15g00614 314 Pfam Homeodomain 93 146 IPR001356 GO:0003677
Bpe15g00614 314 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Bpe15g00614 314 SMART HOX_1 91 152 IPR001356 GO:0003677
Bpe15g00614 314 CDD homeodomain 93 149 IPR001356 GO:0003677
Bpe15g00614 314 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Bpe15g00614 314 Gene3D - 87 154 - -
Bpe15g00614 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 46 312 IPR045224 GO:0003700
Bpe15g00614 314 Coils Coil 147 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00614 - - - jre:108999210 290.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00275 Bpe15g00614 CCT
Bpe13g00275 Bpe15g00614 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00055 Bpe-Chr10:814200 Bpe15g00614 Bpe-Chr15:17020322 7.98E-43 dispersed
Bpe11g01552 Bpe-Chr11:11549792 Bpe15g00614 Bpe-Chr15:17020322 2.58E-41 dispersed
Bpe08g01017 Bpe-Chr8:12441778 Bpe15g00614 Bpe-Chr15:17020322 3.19E-24 transposed
Bpe09g00244 Bpe-Chr9:1772510 Bpe15g00614 Bpe-Chr15:17020322 3.90E-21 transposed
Bpe11g01633 Bpe-Chr11:12447351 Bpe15g00614 Bpe-Chr15:17020322 2.99E-33 wgd
Bpe13g00467 Bpe-Chr13:12180833 Bpe15g00614 Bpe-Chr15:17020322 1.74E-43 wgd
Bpe13g00275 Bpe-Chr13:10675184 Bpe15g00614 Bpe-Chr15:17020322 1.37E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22598 PF00046 Homeodomain 2.10E-16 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00614 Bpe_Chr15 FPKM 3.887619 0.0 2.998017 3.157288 2.973112 2.421816 0.0 3.295566 3.992974 3.140821