Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00619 ATGCTGAACACGAACGTCGCCGTCGATTCTGTTACCGACGGTGGTGAGTTTGGTGACGGTGCTAGAGAGATCATGCTGTTTGGGGTTAGAGTGGTTGTGGATTCAATGAGGAAGAGCGTGAGTTTGAATAACCTGTCGCAGTACGAGCATCCTCACGACGTCTCTAATTGCAAAGTTAGGAGCAGCAACGGAAAAAATGAAGTTGCAGCTGGTTATGCGTCTGCAGACGATGTCGTTCCGAATTCAGACGGGAATCGCGAGCGGGAACGCAAGCGAGTAGGAGTGCCGTGGACAGAGGAAGAGCACAAGCTATTTCTGTTGGGATTGCAGAAAGTAGGAAAAGGTGATTGGAGAGGAATCTCAAGGAATTTTGTGAAAACTCGAACGCCAACACAAGTGGCGAGCCACGCTCAGAAGTACTTTCTCCGTCAAACAAATCTTAATCGCCGCCGAAGGAGATCTAGCCTCTTCGACATCACCACCGAAACGGTGAAACCAATGCCAATGGAAGAAGAGGAAGCACTAGGTCATGTCTCTCAATTGCATTCCTTGCCACCACCTTATTTAACTGAATCTAGCAGTACCACTGGATTCCCTATTTTTACAACTTTTTCTCAAGCTGTTGGGCCAGCAACATTATCATTGCCAATTGAACACCCAATGGAGAAGCTAACAATAGGAGGAAGAAACCAAGCAAGCGATGCATCTTTGAAGTATCTCTGCCCACCTGATGTGAAAAATATTCCTGGTGTCACAAGTCTAGCCGATATCGATTTGAATTCCAAGTCAGGAATGCATCATTCAGCTCTATCTCTCAATCTTTCCCTGCCATCAGACCTAAGTGACTCGTTGTCAAGACACTCATCTTTTCCGGCCGTGGTAATCCACTGTTTGATTTCTCATCCAAACCATTTTTTATTTTTTCTATGTACCTTTTCTATGTACTTCGAAGCCCATCCATCGACGTTTCCTTCGTCGAAACTGCTCCTTGTCTCATCCATCAACCATGATGAACCCTTCTCCAATCTGGGTTTTATTCATTTTCTTGCTTCCCAAACAGAATATTTTCTCGAGAAAATGAAATCCAGTGCGGAGAATAGAACAGTGAAGAAACTGGAAATGCAAGCAACCCCAAGGAATTTGCTTTATAATTCTGCTCACGGATCCAATCTTACGTCACCTTTTATCGAATGTTTTATACATTACATTCTCCTTCTTCGTTACAACATCAAATTACCTTTCAAGCGACATTCATTAAATCAATTAGAGATTGTAGGGTGTAACCGAGTCTGCAAGGAGATAATGGCGAAGCGTTCATTCACGCGTTTTATCGAACAGGAGCTGGGCAAGTTTCCCCACTTCTTGATTTTCGCCGTCCTTGAATGGGTCCTCATAATTTTGCTTTTCGTCGATGGGTTTCTCTCGTATCTCGCCAATGAATTTTCCAAGTTCTTCGATTTGCAACTTCCTTGTCTGCTATGTACGAGAATCGACCACGTTCTTGTTCATCGCAATTCTGATTTTTATTACAACGACTCCATTTGCGAAGCTCACAAGAGACACGTATCGTCACTTGCATACTGTCATAATCACAAGAAATTGTCTGATATCAGGCAAATGTGCGAGGCTTGTCTTCTTTCTTTCGCAACAGAAAGAGAATCCGACTGTGGTACTTATAAATCTCTGGTGGGAATTTTGCACAAGGATCTCGAATGCTTTGTTGAAGACGATCACCAGATTTTGAGCTTACCTTCTGGGAAAAATGACGAGATTACGCAAATGGAGCAGACCTGCACTCGTCTTTGCTCTTGTTGTCAAGCGCCATTAAAGGCAAAATCCTCAAAATTGAAGGGGAAAGTCGGTACTTCTTTTTCCCAAGCTCCGGCTCCATCTCCGCGAGCTCCATTTTCAAATTCGAAAAATGAGGAGAATCGTGGTTTGGAGTTGCCCCATGTCAGATACTCCAAACTTAAATTCATATCCGACAATGAAAACGAGCTTCCAGAGGACGAAGATGTGATCATCGTTGTTTATTGCTTCATCAAACCAAAGACACTTTCTGTAATTTTTTCTTTTTCAGTTAAGGAAGATGTAGCAGCAACGGTGCCATTGCTGACAGAAACCGAGGAATTGAACGATGATGTGATCAAGACGCCTAGTTTTGTTAAAGGAAACAAATTTTTTGGAATCCCCTTAACAGATTCAGCTAATAACAGTCCAAGGTGGGGAATTAAGATCTCAAGGAAATCGCCACTCGAAAAAACAGACTTTGCACCGGAGTCCGTGGAAGGAACTCTACCCGAAGAAGGAGATGGAGATTCGATTTTATATTCATTGAAAAGACAAGTTCGATTGGATCGGAAATCGTTGATGGCTTTGTACATGGAGCTAGACGAAGAAAGAAGCGCTTCGGCTGTGGCGGCAAACAACGCAATGGCAATGATCACCCGATTGCAGGCAGAAAAGGCAGCCATGCAAATGGAAGCTTTGCAGTATCAGAGAATGATGGAGGAGCAAGCGGAGTACGACCAGGAAGCTCTGCAAGCTGCAAATGATTTGCTTTTAAAGAGAGAGGAAGAGATGAAGAACTTAGAAGCAGAGCTGGAGGCTTTGAAAGATGAGTATGGATGTGTAAAAGCAGACAATTTTAAGACATCCTTTGACAAATCCGATGAAGAGTCTCAGGAACGCAAACCACAATGTGACACTCCCAAGAAAATAAGAAACAACTTTGATCAAGCTGAGTCGTCCAACGGGAGGATGGAAGGGGGAATACTTAGTGACTCGCTGAAAGCATTCGGACGGGAAAAGGCGCATTTTTTACGCAAAACGAAGAAATCCAAGAAGGACAGCTTCTCATCAGATGAAGAGGTTCATTCGTTACAGTCTAGCTCCGACAGTGTGTGCGGTGAAGAAGAAAACGAAGAAGAAGGGATAGGTAATTTTCTTGATGAACCGTTAGTTTCGCTCTCAAACGTGACAGGAAATGGGAAGAGATTCTACCTCACTAGAGAATTGTCTCGTCTTGGAGAGAGAGTGAAGGCCCTCGAAGAAGATAGCGGGCTTTTGGAACAAGCCTCCGAGACACCTCAGAAACACAGCCAAGGATCGAAAATTTTGACGGAGATTTCTCGGAATCTGGTGAAGCTGCAGAACCTCATTACAATGCCTTGCGAAGAAAATGATGCATGA 3192 43.73 MLNTNVAVDSVTDGGEFGDGAREIMLFGVRVVVDSMRKSVSLNNLSQYEHPHDVSNCKVRSSNGKNEVAAGYASADDVVPNSDGNRERERKRVGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQTNLNRRRRRSSLFDITTETVKPMPMEEEEALGHVSQLHSLPPPYLTESSSTTGFPIFTTFSQAVGPATLSLPIEHPMEKLTIGGRNQASDASLKYLCPPDVKNIPGVTSLADIDLNSKSGMHHSALSLNLSLPSDLSDSLSRHSSFPAVVIHCLISHPNHFLFFLCTFSMYFEAHPSTFPSSKLLLVSSINHDEPFSNLGFIHFLASQTEYFLEKMKSSAENRTVKKLEMQATPRNLLYNSAHGSNLTSPFIECFIHYILLLRYNIKLPFKRHSLNQLEIVGCNRVCKEIMAKRSFTRFIEQELGKFPHFLIFAVLEWVLIILLFVDGFLSYLANEFSKFFDLQLPCLLCTRIDHVLVHRNSDFYYNDSICEAHKRHVSSLAYCHNHKKLSDIRQMCEACLLSFATERESDCGTYKSLVGILHKDLECFVEDDHQILSLPSGKNDEITQMEQTCTRLCSCCQAPLKAKSSKLKGKVGTSFSQAPAPSPRAPFSNSKNEENRGLELPHVRYSKLKFISDNENELPEDEDVIIVVYCFIKPKTLSVIFSFSVKEDVAATVPLLTETEELNDDVIKTPSFVKGNKFFGIPLTDSANNSPRWGIKISRKSPLEKTDFAPESVEGTLPEEGDGDSILYSLKRQVRLDRKSLMALYMELDEERSASAVAANNAMAMITRLQAEKAAMQMEALQYQRMMEEQAEYDQEALQAANDLLLKREEEMKNLEAELEALKDEYGCVKADNFKTSFDKSDEESQERKPQCDTPKKIRNNFDQAESSNGRMEGGILSDSLKAFGREKAHFLRKTKKSKKDSFSSDEEVHSLQSSSDSVCGEEENEEEGIGNFLDEPLVSLSNVTGNGKRFYLTRELSRLGERVKALEEDSGLLEQASETPQKHSQGSKILTEISRNLVKLQNLITMPCEENDA 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17053693 17060813 - Bpe001552.1 Bpe15g00619 116298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00619 1063 Pfam Myb-like DNA-binding domain 96 141 IPR001005 -
Bpe15g00619 1063 ProSiteProfiles SANT domain profile. 92 145 IPR017884 -
Bpe15g00619 1063 Coils Coil 1006 1026 - -
Bpe15g00619 1063 CDD SANT 96 141 IPR001005 -
Bpe15g00619 1063 MobiDBLite consensus disorder prediction 888 909 - -
Bpe15g00619 1063 Pfam Zein-binding 778 868 IPR007656 -
Bpe15g00619 1063 Coils Coil 808 835 - -
Bpe15g00619 1063 SUPERFAMILY Homeodomain-like 91 146 IPR009057 -
Bpe15g00619 1063 PANTHER MYOSIN-BINDING PROTEIN 6-RELATED 435 1059 - -
Bpe15g00619 1063 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Bpe15g00619 1063 ProSiteProfiles GTD-binding domain profile. 774 872 IPR007656 -
Bpe15g00619 1063 SMART sant 93 143 IPR001005 -
Bpe15g00619 1063 MobiDBLite consensus disorder prediction 620 643 - -
Bpe15g00619 1063 MobiDBLite consensus disorder prediction 69 94 - -
Bpe15g00619 1063 Coils Coil 847 881 - -
Bpe15g00619 1063 MobiDBLite consensus disorder prediction 888 923 - -
Bpe15g00619 1063 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 144 IPR006447 GO:0003677
Bpe15g00619 1063 ProSiteProfiles Myb-like domain profile. 96 141 IPR001005 -
Bpe15g00619 1063 Gene3D - 95 147 - -
Bpe15g00619 1063 PANTHER MYOSIN-BINDING PROTEIN 2 435 1059 IPR039306 GO:0017022
Bpe15g00619 1063 MobiDBLite consensus disorder prediction 944 972 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00619 - - - zju:107418514 669.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00268 Bpe15g00619 CCT
Bpe12g00497 Bpe15g00619 CCT
Bpe07g00811 Bpe15g00619 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00856 Bpe-Chr13:14760167 Bpe15g00619 Bpe-Chr15:17053693 1.73E-14 dispersed
Bpe15g00619 Bpe-Chr15:17053693 Bpe12g00497 Bpe-Chr12:10783517 1.33E-33 dispersed
Bpe03g00022 Bpe-Chr3:373771 Bpe15g00619 Bpe-Chr15:17053693 1.77E-22 transposed
Bpe09g00311 Bpe-Chr9:2621411 Bpe15g00619 Bpe-Chr15:17053693 2.18E-19 transposed
Bpe09g00643 Bpe-Chr9:15068128 Bpe15g00619 Bpe-Chr15:17053693 6.18E-25 transposed
Bpe12g00571 Bpe-Chr12:11524788 Bpe15g00619 Bpe-Chr15:17053693 1.12E-82 wgd
Bpe13g00268 Bpe-Chr13:10613183 Bpe15g00619 Bpe-Chr15:17053693 0 wgd
Bpe15g00619 Bpe-Chr15:17053693 Bpe07g00811 Bpe-Chr7:14433413 5.43E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g468 Blo04g00753 . . . . Bpe13g00268 Bma06g00191 . Cmo13g00941 Cmo18g00108 . . . . . Cpe20g00213 . . . . . . . . . . . . . . . Cone2ag0876 Cone16ag0134 . . Lsi02g00337 Csa01g00808 Chy12g01308 Cme12g01733 . . Bda11g01681 . . Bpe15g00619 Bma03g00805 . Sed08g2554 . . Cma13g00915 Cma18g00138 Car13g00756 Car18g00130 Cpe09g01054 . Bhi08g01436 Tan05g2058 Cmetu12g1044 Lac10g0398 Hepe07g2265 . . Cla01g01407 Cam01g1469 Cec01g1512 Cco01g1556 Clacu01g1495 Cmu01g1389 Cre01g1306 . . . .
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006343 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22599 PF04576 Zein-binding 2.30E-32 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00619 Bpe_Chr15 FPKM 2.667302 2.043022 0.067925 0.004854 0.0 0.0 0.340571 0.110591 0.239907 0.101111