Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00641 ATGGCGCTTGACAGTGCCAAGGAAATCGTTTCCTCCAATCCCGTCGTCGTCTTCAGCAAAACCTATTGTGGTTATTGCAGGAGGGTTAAACAGCTTCTGACGGAGCTAGGAGCGAGCTACAAGGTGATTGAACTAGATAAAGAAATTGATGGAGCCGATATTCAGTCAGCTTTAGCTGAGTGGACTGGCCTTAGAACTGTGCCTAATGTCTTCATCGGCGGAAAACATATCGGTGGTTGTGACATTGTTTCATGGAAGCATGGGCAAGGTCAGCTCGTCCCCCTTCTTAACGAGGTCAAAGCCATTGCCAATAATTCTTCCAAACTGTAA 330 46.67 MALDSAKEIVSSNPVVVFSKTYCGYCRRVKQLLTELGASYKVIELDKEIDGADIQSALAEWTGLRTVPNVFIGGKHIGGCDIVSWKHGQGQLVPLLNEVKAIANNSSKL 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17199761 17201785 - Bpe001574.1 Bpe15g00641 116320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00641 109 PANTHER GLUTAREDOXIN 2 1 107 - -
Bpe15g00641 109 PANTHER GLUTAREDOXIN-C2 1 107 - -
Bpe15g00641 109 Gene3D Glutaredoxin 1 109 - -
Bpe15g00641 109 ProSiteProfiles Glutaredoxin domain profile. 3 103 - -
Bpe15g00641 109 ProSitePatterns Thioredoxin family active site. 15 33 IPR017937 -
Bpe15g00641 109 CDD GRX_GRXh_1_2_like 14 95 - -
Bpe15g00641 109 SUPERFAMILY Thioredoxin-like 4 101 IPR036249 -
Bpe15g00641 109 Pfam Glutaredoxin 15 77 IPR002109 -
Bpe15g00641 109 PRINTS Glutaredoxin signature 15 33 IPR014025 -
Bpe15g00641 109 PRINTS Glutaredoxin signature 74 87 IPR014025 -
Bpe15g00641 109 PRINTS Glutaredoxin signature 60 73 IPR014025 -
Bpe15g00641 109 TIGRFAM GRX_euk: glutaredoxin 15 94 IPR011899 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00641 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - qsu:111991481 179.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00689 Bpe-Chr9:15455443 Bpe15g00641 Bpe-Chr15:17199761 4.75E-07 dispersed
Bpe10g00322 Bpe-Chr10:10724901 Bpe15g00641 Bpe-Chr15:17199761 8.73E-26 dispersed
Bpe11g01515 Bpe-Chr11:11266769 Bpe15g00641 Bpe-Chr15:17199761 3.93E-49 dispersed
Bpe15g00641 Bpe-Chr15:17199761 Bpe13g00651 Bpe-Chr13:13342790 2.01E-18 dispersed
Bpe15g00641 Bpe-Chr15:17199761 Bpe05g00958 Bpe-Chr5:22475822 1.66E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00382 Csa01g00862 . Cme12g01684 . . . Bda14g00807 . Bpe15g00641 Bma03g00778 . Sed01g1640 . . . . . Car18g00168 Cpe09g01018 . Bhi08g01625 Tan05g1994 Cmetu12g1182 Lac10g0460 Hepe07g2217 . . Cla01g01309 Cam01g1421 Cec01g1455 Cco01g1469 Clacu01g1374 Cmu01g1282 Cre01g1257 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003081 2 2 1 3 2 1 2 1 0 1 2 1 1 2 2 1 1 2 2 1 2 2 2 2 2 2 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00641 Bpe_Chr15 FPKM 1.851839 1.096871 2.12529 1.736289 20.664831 20.009659 25.63788 0.110409 0.0 0.0