Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00644 ATGTCGTACTTGATGAGAGAAAGCTCGGCAGCCATTGAAGGATCATCTAGAGCCTTTGTTCGAAGGATGGTGAGCCTTCCAAGAAGCATTGTAGGAGAATTTTCAAGAGTGATGGGGCAAGGAATAGACATTATGGGTCTAGGAAGGAGAAGATCAAACCAAAATATACAACAGAACTTCCACTTTCCAAACCCACAAGTTCCTTTACCTGTTTCAGAGTGGGATTTTCTAGCAAAGTTTCAGCAGCAAAATGGCTGTCTTCATCCTTTCTTTTATGCTTGTTCTCTAATGGAGGTTCTGAAAATAGCAGAGATGGAAAAGAAGTTCTTGTTCGTCTATCTTCACTCTCCAGATCACCCTTTTACGCCGTCCTTCTGCAGAGATACGCTCTGTTCTGAGCTGGTCGTCCAGTTTCTGGACGCTAATTTCATTTCCTGGGGGGCTCTGGAAAGTGAAGGAGAGGGTCTTCTAATGGCTTCCATTTTAAAACCTTCGTGCTTCCCTTTCTGCGCCGTGATTGTTCCTGCATCAGATCATAACATGACAGTATTACAACAGATGGAAGGGCCGATCCCTCCAGCTGAGATGGTGGAGATTCTGCAGACAACAATGGAGGAGCAAGGTTTGGCCTTTGGTAGCTTGAAGGAGAAGAATGGGGAGAAGATTAAAGCAGATAGAAGGATAAGAGAAGAGCAAGATGCAGCTTATTTTAAAGCTCTTCACATTGATAAGGAAAAAGAAAAATCCAAGAATTCTTCTGCAGTGGAGAGGAGTAAAAAGGTGGAAGAAGCTTCAAACGAAGCAAAACCCCAGAAATTGAAGAAGAACCCCGCAAAAATTGAGCAAATCAACGCGAAAGAAACAGTATCGGCTACTCAAACTCCATTGAAGGATCAAACGAAGACTACACAGATACTGATCAGGTTTCCAAATGGCGAAAGAAGAGAGCGGAGTTTTTCGAGCAGAGACAAAGTGAAATCGATTTACCGATACATCGACTCGCTCCGATTAAACGGTGTCGAGAATTACAGACTGGTTTCGAGCTTCCCCAGAAGAGTCTATGGAGGTAGTGAGATGGAGATGTCTCTCCAAGATGCTTCCCTCCATCCCAGGGCAACTCTGTTTGTGGAGCTCCATTAA 1140 44.04 MSYLMRESSAAIEGSSRAFVRRMVSLPRSIVGEFSRVMGQGIDIMGLGRRRSNQNIQQNFHFPNPQVPLPVSEWDFLAKFQQQNGCLHPFFYACSLMEVLKIAEMEKKFLFVYLHSPDHPFTPSFCRDTLCSELVVQFLDANFISWGALESEGEGLLMASILKPSCFPFCAVIVPASDHNMTVLQQMEGPIPPAEMVEILQTTMEEQGLAFGSLKEKNGEKIKADRRIREEQDAAYFKALHIDKEKEKSKNSSAVERSKKVEEASNEAKPQKLKKNPAKIEQINAKETVSATQTPLKDQTKTTQILIRFPNGERRERSFSSRDKVKSIYRYIDSLRLNGVENYRLVSSFPRRVYGGSEMEMSLQDASLHPRATLFVELH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17221180 17222547 - Bpe001577.1 Bpe15g00644 116323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00644 379 Coils Coil 214 234 - -
Bpe15g00644 379 SMART ubx_3 295 378 IPR001012 GO:0005515
Bpe15g00644 379 Gene3D - 298 378 - -
Bpe15g00644 379 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 378 - -
Bpe15g00644 379 SUPERFAMILY Thioredoxin-like 73 209 IPR036249 -
Bpe15g00644 379 CDD UBX 305 377 - -
Bpe15g00644 379 Pfam UBX domain 300 377 IPR001012 GO:0005515
Bpe15g00644 379 SMART 45neu3 75 201 IPR006577 -
Bpe15g00644 379 Gene3D Glutaredoxin 73 209 - -
Bpe15g00644 379 SUPERFAMILY Ubiquitin-like 247 377 IPR029071 -
Bpe15g00644 379 ProSiteProfiles UBX domain profile. 298 376 IPR001012 GO:0005515
Bpe15g00644 379 PANTHER FAS-ASSOCIATED PROTEIN 8 378 - -
Bpe15g00644 379 CDD UAS 91 206 - -
Bpe15g00644 379 MobiDBLite consensus disorder prediction 247 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00644 K18726 FAF2, UBXD8; FAS-associated factor 2 - mnt:21397707 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00630 Bpe-Chr5:20190697 Bpe15g00644 Bpe-Chr15:17221180 8.99E-14 dispersed
Bpe08g00875 Bpe-Chr8:11134949 Bpe15g00644 Bpe-Chr15:17221180 5.27E-74 dispersed
Bpe11g01725 Bpe-Chr11:13589513 Bpe15g00644 Bpe-Chr15:17221180 1.37E-09 dispersed
Bpe15g00644 Bpe-Chr15:17221180 Bpe07g00124 Bpe-Chr7:885780 1.56E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00644 Bpe_Chr15 FPKM 1.649697 3.403314 0.630242 0.105745 5.908601 5.226635 7.17617 0.0 0.073353 0.0