Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00653 ATGGAGTCCACGTTAGTGATCAAGGTGAAGTATGGGCAAACTCTTAGGCGTTTCAATGCTTATATTCTTCCTGGAAATGATAAATTGGATCTTGACATGGATGGACTGAGGGCAAAAATTTGTAGTCTTTTTAATTTTCCACGCGAAGCTGATCTGAAAATGACTTATATTGATGAAGATGGTGATGAGGTGACCTTGGTCGACGATGATGATCTCTTTGATGCGATCAGCCAACGGTTGAAATTCTTGAGGATTGATGTTCGATTGAGTAATGAGAGTAGTAAAACTAGTGTTCAGTCAAGTGGAAATTCCACCCCACCTAGATCTTCGCAGACTGAGAATCGTTTTCCAAATATTAATGCTGGTGTTGCTGAGATTTTGAAACCTTTGCCAGAGCCTGTTCATGAGGCAATGTCAAATCTCTATAGTGACATTTCTTCAAAGGTTGCTTTGTCTAATCCTACGATTGCAGACATTGTTGAAAGCCTTGTTCATCTTGGTAACTCCTACCGGAATTCAGATTCACAGCCTCCCACTGGTGCAGAGTCAAGCACACAGACTGTACCCTTTGAGAGCCCAATGCCTCCTTCTGTCACTAATTCTAAGCCCTCAAAGAACGATGACTATCCAATAGCATCTCCAAGGTCCACATTGGCCGAGGTCCCTTCCAAAAACATTCAGGAGGTCAATACTGGAAATTTAACTGAGAGCCTGGGTGATAATGCTAAGGTTATGTTTTCGCCTATTCCTATTGACCTTAATGTTCATCCAACTGATTCCAAAGAATCGGAATGTGTTATTTTAAATATAGAACCATCAGCATCTAATACCACTTCTGGTATGAAGAAAGAAACTAGCAAAGAGACAGAGAAGGAGACAACCCCTTGTTTCTTGAGTGGAATTTATGGGAATGATGCTGCCTTTACAAGGATGGGTGATACAGAGCGAGAATATCCAAATGAGTGTCCATATAGTGGAGTACCTGTAGCTGGTGACTTTTCCTTTCTGCCGATTTCACACAGTCACATTTATCCAGCTAAAAGAAGCTTCAGCCGATGTGCAGATTTGGGCATCGTGTTTCATAGGGGTGTTATTTGTGATGGTTGTGGAGTACATCCAATAACTGGACCACGTTTCAAGTCCAAAGTGAAAGAAGACTTTGATCTCTGCAGCATGTGTTTTGCAAAAATGGGAAATGAAGCTGATTATGTTAGAATGGACCATCCTATCCACCATCGACATTCACGATCTTTCCGAGGATTACATAACCAGCGTCCATGGGTGGGCCCTCCAATAATACCACGTATTTTGAAAGGATGTGGAGCTAAGGCTGGTCGACCTAAACTAGAGTCTCGCTTCATTATGGATGTTAATGTCTTGGATGGGACTATTATGGCTCCATGTACTCCATTCACCAAGATATGGAGAATGCGAAACAATGGTTCATTGGATTGGCCAAAAGGAACTCAGCTTCTATGGATTGGAGGAGATAAATTCAGTCATGCCATTTCAGTCGAGATAGAGATTTTGGCCGGGTGTATTCCTGTGGATAAAGAAGTAGATATTGCAGTGGATTTTATTGCGCCTCAGTTGCCTGGTCGATACATCTCATATTGGAGGATGGCGGCTCCATCTGGTCAGAAGTTCGGGCAACGGGTTTGGGTTCTCATCCAGGTTGACGCATCTCTTGGCAGGACTCTTTCAGCTAGTTTGCAAGATTTGAACCTGAATCTTCCCCCGCTAAGTGGGATGGGAAATGGGCCTAAAACAATTGATATGAATGTTGAACCCTGTGAAGTCAACTCCTTCCTCCAGGCCATTCCAGTGAAACCAGCTGATGAACTGCCTAAAAGCGAGAGTGAGATGTATTTTCCCATAGATGATACCTTGCTAGTTGGTCAGAGATTTTCTTGCCCAACGGTCCCTACTGCTCCCGCGTCTTCTTCAGCTGTATCTACTGTTCTTGGCGACCAAAAACTTACTGTGCCTACAGCTCCCGAGTCATCTTCAGCTGTGTCTTATCCTGTCGATGGGGACAAAAATTTTCCAGTGTCTACTTCTCAGATTCCTCCACTGATGTACCCCATCATTGATGTTTCCATGCCGGCCCCTGTCATTGTTACCCCTCCACCAACTGAAGACGGCATTGCCAACAAAGAGCTCGAGGAGAGCCTCCTTAAAGAGCTCGAGGAGATGGGATTCAAACAGGTTGATTTGAACAAAGAAGTCCTGAGGATCAACGAGTACAATTTGGAACAGTCAGTGGATGATCTCTGTGGAGTGTCTGAATGGGATCCAATTCTTGAAGAGTTGGAAGAAATGGGATTCTGTGATAAGGTGATGAACAAGAAGCTGCTGGTGAAGAATAATGGTAGCATCAAGCATGTGGTCATGGACCTCATCTCTGGGGAGAAGGCTTAG 2421 43.82 MESTLVIKVKYGQTLRRFNAYILPGNDKLDLDMDGLRAKICSLFNFPREADLKMTYIDEDGDEVTLVDDDDLFDAISQRLKFLRIDVRLSNESSKTSVQSSGNSTPPRSSQTENRFPNINAGVAEILKPLPEPVHEAMSNLYSDISSKVALSNPTIADIVESLVHLGNSYRNSDSQPPTGAESSTQTVPFESPMPPSVTNSKPSKNDDYPIASPRSTLAEVPSKNIQEVNTGNLTESLGDNAKVMFSPIPIDLNVHPTDSKESECVILNIEPSASNTTSGMKKETSKETEKETTPCFLSGIYGNDAAFTRMGDTEREYPNECPYSGVPVAGDFSFLPISHSHIYPAKRSFSRCADLGIVFHRGVICDGCGVHPITGPRFKSKVKEDFDLCSMCFAKMGNEADYVRMDHPIHHRHSRSFRGLHNQRPWVGPPIIPRILKGCGAKAGRPKLESRFIMDVNVLDGTIMAPCTPFTKIWRMRNNGSLDWPKGTQLLWIGGDKFSHAISVEIEILAGCIPVDKEVDIAVDFIAPQLPGRYISYWRMAAPSGQKFGQRVWVLIQVDASLGRTLSASLQDLNLNLPPLSGMGNGPKTIDMNVEPCEVNSFLQAIPVKPADELPKSESEMYFPIDDTLLVGQRFSCPTVPTAPASSSAVSTVLGDQKLTVPTAPESSSAVSYPVDGDKNFPVSTSQIPPLMYPIIDVSMPAPVIVTPPPTEDGIANKELEESLLKELEEMGFKQVDLNKEVLRINEYNLEQSVDDLCGVSEWDPILEELEEMGFCDKVMNKKLLVKNNGSIKHVVMDLISGEKA 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17276916 17280572 + Bpe001586.1 Bpe15g00653 116332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00653 806 Pfam PB1 domain 6 78 IPR000270 GO:0005515
Bpe15g00653 806 CDD PB1_Joka2 5 92 - -
Bpe15g00653 806 CDD NBR1_like 447 560 IPR032350 -
Bpe15g00653 806 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 214 804 - -
Bpe15g00653 806 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 176 - -
Bpe15g00653 806 MobiDBLite consensus disorder prediction 170 225 - -
Bpe15g00653 806 CDD UBA_NBR1 763 801 - -
Bpe15g00653 806 SMART PB1_new 4 90 IPR000270 GO:0005515
Bpe15g00653 806 Gene3D - 717 762 - -
Bpe15g00653 806 MobiDBLite consensus disorder prediction 93 116 - -
Bpe15g00653 806 Pfam Ig-like domain from next to BRCA1 gene 458 559 IPR032350 -
Bpe15g00653 806 Gene3D - 763 804 - -
Bpe15g00653 806 Pfam Zinc finger, ZZ type 361 396 IPR000433 GO:0008270
Bpe15g00653 806 SUPERFAMILY CAD & PB1 domains 4 81 - -
Bpe15g00653 806 SUPERFAMILY RING/U-box 358 412 - -
Bpe15g00653 806 PANTHER PROTEIN JOKA2 214 804 - -
Bpe15g00653 806 PANTHER PROTEIN JOKA2 1 176 - -
Bpe15g00653 806 ProSiteProfiles Zinc finger ZZ-type profile. 361 411 IPR000433 GO:0008270
Bpe15g00653 806 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 720 758 IPR015940 -
Bpe15g00653 806 Gene3D - 358 417 IPR043145 -
Bpe15g00653 806 SUPERFAMILY UBA-like 704 759 IPR009060 GO:0005515
Bpe15g00653 806 Gene3D - 1 89 - -
Bpe15g00653 806 ProSiteProfiles PB1 domain profile. 4 90 IPR000270 GO:0005515
Bpe15g00653 806 MobiDBLite consensus disorder prediction 170 211 - -
Bpe15g00653 806 Gene3D Immunoglobulins 444 562 IPR013783 -
Bpe15g00653 806 SUPERFAMILY UBA-like 764 801 IPR009060 GO:0005515
Bpe15g00653 806 SMART zz_5 360 405 IPR000433 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00653 K17987 NBR1; next to BRCA1 gene 1 protein - cit:102622663 707.212
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00653 Bpe_Chr15 FPKM 11.714511 12.038839 14.84007 14.17741 10.646037 10.49012 9.813994 17.051903 15.574203 16.640562