Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00663 AACTCCATGGATGATAGTTCGATTCCGCCGCCTAAGGTCGTCGTTTTGGCGGACCTTAACGTTGATCCTCCTGAAATGGATGACGATGACTCTGTCCCCGTTTCAGCTCCAGATATTAACAGATTGGCTATCGAGGACAACAATCAAGATAAAAGTACGTTAATGAACAAAGACACTGATGCTGTAGAAGTTGAAGGTAGTAAACGGGTAAACAAATTTGGGAAATGCCGTTCAAGAATAAATAAAGCTGATTGCTCCGGTGATTATGGACCTGAAGCTGATGCCGAGCATCAAGGTCCAGGAGTTTCCTCATCCCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGCTCATGTTGCAAGGAAGATGCCAAAAAATGCTCATGCTCATTTTATTCTTGGCCTGATGTACCAAAGAGTTGGGCAACCACAAAAGGCAGTTGCAGCATACGAGAAGGCAGAGGAGATCTTACTTCGTTCTGATTCTGAGATTGATAGGCCAGAATTTCTGTCAATGATTCAAATCCACCATGCACAGTGCCTTCTACTAGAAACTGCTGGGGATAGGTCAGATAAAGAACTTGAGATTGAAGAGCTAGAGGAAATTCTCAATAAACTTAAGGAGTCAATGCAATCTGATGTTAGACAGGCAGCTTTATGGAATACTGTAGGCTTGATGCATCTTACAACTGGTCGTCTGCAGAATGCTATTGCTGTTTTTTCTTCTTTGTTGAGCATTGTTCCCGACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGCGGAAATGTGGAACAATCAGAAAAATGTTTTCAAGAATTGATCTTGAAGGATCAAAATCATCCTGCTGCCTTAATCAACTATGCTGCTCTTCTGTTATGCAAGTATGGTGCAAATGTTGCAGGTGCTGGGGCAAATGCTGGGGAAGGATCTTCAGTGAATCAGATCAAAGGTATGATTGTTGCAAAAGAGTGTTTGCTGACAGCTTTGAAAGCAGATCCAAAAGCGGCTCATTTATGGGCAAATCTTGCTAATGCATACCATATTATTGGTGATCACAGAAGTTCTGGAAAGTGCTTTGAGAAGGTGGCAAAACTTGAACCCAATTGCATGTCTATGCGGTATTCCATTGCTGTGCACCGAATAAAGGATGCAGAGAGATCCCAAGATCCAAGTGAACAGCTTGCCTGGGCAGGAAACGAAATGGCCTCAATAATAAGAGATGGAGATAGTTCTGTAATTGAGCATCCTATAGCATGGGCGGGGCTTGCCATGGCACAGAAGGCCCAACACGAGATTTCTGCAGCATTTCAAATTGAGCAGTCTGAGCTAATGGAGGCTGAAGAGCGAGCAGTTCATAGTTTAAAGCAGGCAATATCTGAGGATCCCGAAGATGCAGTACAGTGGCACCAACTTGGCCTGCACAGCCTTTGTACTAGGCAGTTCAAATCATCACAAAGGTACCTTAAATCCGCCATTGCTCGCTTCAAGGATTGCAGTTATGCATGGTCAAATCTTGGTGTTTCACTGCAGCTGTCAGAAGAACCGATACATGCTGAAGAAGTATACAAGCGAGCCTTGGAATTGGCCACTGCAAACTGCGCACATGTGATATTTTCAAACCTTGGAAATCTCTACCGGCAGCAAAAACAGTATGAGCGTGCCAAAGCCATGTTTTCAAAGTCTCTGGATCTGCAGCCTGGCTATGCACCTGCATTTAACAATCTAGGCCTTGTATTTGTTGCCGAAGGTCAATGGGAAGAAGCTAAATACTGTTTTGACAAAGCCCTGCAAGTTGACCCATTACTTGACGCAGCCAAATCCAATGTGATTAAAGCAGCAGCCATGTCAAAATTTTGTAGCAGCTAG 1881 43.65 NSMDDSSIPPPKVVVLADLNVDPPEMDDDDSVPVSAPDINRLAIEDNNQDKSTLMNKDTDAVEVEGSKRVNKFGKCRSRINKADCSGDYGPEADAEHQGPGVSSSREEKVSSLKTGLAHVARKMPKNAHAHFILGLMYQRVGQPQKAVAAYEKAEEILLRSDSEIDRPEFLSMIQIHHAQCLLLETAGDRSDKELEIEELEEILNKLKESMQSDVRQAALWNTVGLMHLTTGRLQNAIAVFSSLLSIVPDNYDCLGNLGIAYLQSGNVEQSEKCFQELILKDQNHPAALINYAALLLCKYGANVAGAGANAGEGSSVNQIKGMIVAKECLLTALKADPKAAHLWANLANAYHIIGDHRSSGKCFEKVAKLEPNCMSMRYSIAVHRIKDAERSQDPSEQLAWAGNEMASIIRDGDSSVIEHPIAWAGLAMAQKAQHEISAAFQIEQSELMEAEERAVHSLKQAISEDPEDAVQWHQLGLHSLCTRQFKSSQRYLKSAIARFKDCSYAWSNLGVSLQLSEEPIHAEEVYKRALELATANCAHVIFSNLGNLYRQQKQYERAKAMFSKSLDLQPGYAPAFNNLGLVFVAEGQWEEAKYCFDKALQVDPLLDAAKSNVIKAAAMSKFCSS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17333284 17338184 + Bpe001596.1 Bpe15g00663 116342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00663 626 Pfam Tetratricopeptide repeat 542 603 - -
Bpe15g00663 626 SUPERFAMILY TPR-like 453 605 IPR011990 GO:0005515
Bpe15g00663 626 Gene3D Tetratricopeptide repeat domain 418 527 IPR011990 GO:0005515
Bpe15g00663 626 Gene3D Tetratricopeptide repeat domain 321 384 IPR011990 GO:0005515
Bpe15g00663 626 Gene3D Tetratricopeptide repeat domain 105 307 IPR011990 GO:0005515
Bpe15g00663 626 ProSiteProfiles TPR repeat profile. 218 251 IPR019734 GO:0005515
Bpe15g00663 626 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Bpe15g00663 626 Coils Coil 190 217 - -
Bpe15g00663 626 Pfam Tetratricopeptide repeat 128 157 IPR019734 GO:0005515
Bpe15g00663 626 Pfam Tetratricopeptide repeat 341 374 IPR019734 GO:0005515
Bpe15g00663 626 Gene3D Tetratricopeptide repeat domain 528 622 IPR011990 GO:0005515
Bpe15g00663 626 ProSiteProfiles TPR repeat profile. 341 374 IPR019734 GO:0005515
Bpe15g00663 626 MobiDBLite consensus disorder prediction 84 111 - -
Bpe15g00663 626 ProSiteProfiles TPR repeat region circular profile. 574 605 - -
Bpe15g00663 626 ProSiteProfiles TPR repeat profile. 574 607 IPR019734 GO:0005515
Bpe15g00663 626 SUPERFAMILY TPR-like 125 507 IPR011990 GO:0005515
Bpe15g00663 626 Pfam Tetratricopeptide repeat 232 287 - -
Bpe15g00663 626 ProSiteProfiles TPR repeat profile. 540 573 IPR019734 GO:0005515
Bpe15g00663 626 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 9 625 - -
Bpe15g00663 626 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 9 625 - -
Bpe15g00663 626 SMART tpr_5 540 573 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 470 503 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 218 251 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 574 607 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 252 285 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 128 161 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 504 537 IPR019734 GO:0005515
Bpe15g00663 626 SMART tpr_5 341 374 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00663 - - - jre:108980903 932.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00640 Bpe-Chr4:4048732 Bpe15g00663 Bpe-Chr15:17333284 7.07E-06 dispersed
Bpe09g00266 Bpe-Chr9:1948330 Bpe15g00663 Bpe-Chr15:17333284 1.15E-06 dispersed
Bpe15g00663 Bpe-Chr15:17333284 Bpe04g00004 Bpe-Chr4:58083 1.06E-06 dispersed
Bpe15g00663 Bpe-Chr15:17333284 Bpe05g00595 Bpe-Chr5:19997312 4.00E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00663 Bpe_Chr15 FPKM 54.129826 53.975967 62.193508 59.143898 45.788708 44.551888 50.179897 72.373993 75.262505 82.431297