Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00666 ATGGCGTCGGAGGACAAAGGTAGACCGTTGCCAAAATTTGGGGAATGGGACGTAAACAACCCAGCCTCAGCAGAAGGGTTTACTGTGATTTTCAACAAAGCTAGAGACGAGAAGAAAACGAGTGGAACTGCTGCAAATACGGTGTCTCCACGCAAAAATGAGGCTGCATACAAGAATGAAAGCTATCCTCAATACCCTTCAAAGAGGAAGTGGTTTTGCTGTGGTTGA 228 46.05 MASEDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSGTAANTVSPRKNEAAYKNESYPQYPSKRKWFCCG 75
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17354714 17355733 - Bpe001599.1 Bpe15g00666 116345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00666 75 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 74 IPR040387 -
Bpe15g00666 75 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 3 74 - -
Bpe15g00666 75 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00666 - - - zju:107418198 139.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00661 Bpe-Chr7:13339715 Bpe15g00666 Bpe-Chr15:17354714 1.76E-23 dispersed
Bpe14g00740 Bpe-Chr14:5709080 Bpe15g00666 Bpe-Chr15:17354714 3.93E-19 dispersed
Bpe14g00846 Bpe-Chr14:6342041 Bpe15g00666 Bpe-Chr15:17354714 2.19E-08 dispersed
Bpe13g00217 Bpe-Chr13:10216742 Bpe15g00666 Bpe-Chr15:17354714 3.66E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g894 . . . . . . Bma06g00243 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0050 . . . . . . . . . . . Bpe15g00666 . . Sed08g2464 . . . . . Car18g00203 . . Bhi08g01696 Tan05g2899 Cmetu12g2048 Lac10g0538 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00666 Bpe_Chr15 FPKM 11.997273 10.547426 8.85857 8.284441 22.535208 28.884283 20.52767 12.160316 11.529414 12.946412