Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00729 ATGCAAAGGAACGTCAACAGCGGCGGCACAATGGCGGCTCAGCCAGCATGCGCTGCCTGCAAGCATCAGAGGAAGAAGTGCGACGACGCTTGCACACTGGCCCCATATTTTCCGGCAGACAGAACCAGAGAGTTCCAAGCCGTGCACCGAGTTTTCGGGGTGAGCAACGTGACGAAGCTGGTGAAAAACGTGAGCGAAATGGATCGAAACAAGACGGTGGATTCGTTAATCTGGGAAGCCCTGTGCAGGCAGAAGGATCCCGTTTCAGGTCCTTACGGAGAATACAGAAGAATTTACGACGAACTAAAGCTGTACAGAAGCCTAAACCAGACCCAAATGCTGAAAATAGCTGGGGTGGGGATGGGATGGAACAGTTCATACGGGATAAATAACAAACCCAACAATGGAAATGGAGGGGGAATTATGAACAGTACTAGTCATGGCATAAGCTACAGCAACAGTCATGATAATTGGAGTTCTATCATTGATTCTAGTCCTAATAGTTATCCTTCAACTTATACTCAAAGTCCAGAAATTTTACGTAGCGAAAGAGAGGCTTCGTCGGTTGTTCTTCCACTTCAACACCAATCCCAGCAGTGCCATCTCCCCATCAATGGCCTTACGTTCCAGCAATACTATCTTTCAGGTCAAGGAAGCCCTATCAACAGCAAGACCATGCACAGTTCTATTCTATGGGAGGGATCAGGACCGTGA 714 48.04 MQRNVNSGGTMAAQPACAACKHQRKKCDDACTLAPYFPADRTREFQAVHRVFGVSNVTKLVKNVSEMDRNKTVDSLIWEALCRQKDPVSGPYGEYRRIYDELKLYRSLNQTQMLKIAGVGMGWNSSYGINNKPNNGNGGGIMNSTSHGISYSNSHDNWSSIIDSSPNSYPSTYTQSPEILRSEREASSVVLPLQHQSQQCHLPINGLTFQQYYLSGQGSPINSKTMHSSILWEGSGP 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17804876 17805757 - Bpe001660.1 Bpe15g00729 116408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00729 237 Pfam Lateral organ boundaries (LOB) domain 16 105 IPR004883 -
Bpe15g00729 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 226 - -
Bpe15g00729 237 ProSiteProfiles LOB domain profile. 15 115 IPR004883 -
Bpe15g00729 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 11 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00729 - - - mnt:112092179 230.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00729 Bpe-Chr15:17804876 Bpe11g01042 Bpe-Chr11:7773367 1.10E-22 dispersed
Bpe15g00729 Bpe-Chr15:17804876 Bpe15g01233 Bpe-Chr15:20922408 1.76E-21 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g01341 . 11 223 AS2 family AT1G65620 69.2 1.3e-79 292.7
Bpe14g00045 . 12 223 AS2 family AT1G65620 67.9 3.8e-76 281.2
Bpe13g00079 . 2 110 AS2 family AT1G65620 79.8 2.4e-46 182.2
Bpe07g00855 CCT,ECH 3 132 AS2 family AT1G65620 65.4 3.1e-46 181.8
Bpe12g00665 BCT,CCT,ECH 12 139 AS2 family AT1G65620 67.2 1.2e-45 179.9
Bpe15g00346 . 2 110 AS2 family AT1G65620 78.0 8.5e-44 173.7
Bpe13g00250 BCT,CCT,ECH 1 118 AS2 family AT1G65620 69.5 3.2e-43 171.8
Bpe11g01519 . 1 114 AS2 family AT1G65620 68.4 1.0e-41 166.8
Bpe15g00346 . 1 127 AS2 family AT5G66870 79.5 8.3e-54 207.6
Bpe13g00079 . 1 137 AS2 family AT5G66870 75.2 1.1e-53 207.2
Bpe02g01341 . 11 119 AS2 family AT5G66870 78.0 9.2e-45 177.6
Bpe14g00045 . 10 120 AS2 family AT5G66870 78.4 2.7e-44 176.0
Bpe12g00665 BCT,CCT,ECH 10 126 AS2 family AT5G66870 67.5 1.4e-40 163.7
Bpe07g00855 CCT,ECH 1 113 AS2 family AT5G66870 69.0 3.1e-40 162.5
Bpe13g00250 BCT,CCT,ECH 1 113 AS2 family AT5G66870 65.5 3.7e-38 155.6
Bpe11g01519 . 1 114 AS2 family AT5G66870 64.9 4.9e-38 155.2
Bpe12g00665 BCT,CCT,ECH 17 126 AS2 family AT2G23660 63.6 2.0e-39 159.8
Bpe02g01341 . 13 119 AS2 family AT2G23660 68.2 2.0e-39 159.8
Bpe14g00045 . 14 120 AS2 family AT2G23660 68.2 2.0e-39 159.8
Bpe07g00855 CCT,ECH 8 113 AS2 family AT2G23660 64.2 5.7e-39 158.3
Bpe13g00250 BCT,CCT,ECH 8 113 AS2 family AT2G23660 63.2 1.4e-37 153.7
Bpe11g01519 . 5 115 AS2 family AT3G27650 82.0 3.4e-51 198.0
Bpe12g00665 BCT,CCT,ECH 13 123 AS2 family AT3G27650 79.3 5.9e-48 187.2
Bpe07g00855 CCT,ECH 4 114 AS2 family AT3G27650 78.4 2.2e-47 185.3
Bpe13g00250 BCT,CCT,ECH 4 117 AS2 family AT3G27650 73.0 4.2e-46 181.0
Bpe14g00045 . 9 120 AS2 family AT3G27650 67.0 6.3e-42 167.2
Bpe02g01341 . 9 119 AS2 family AT3G27650 67.6 1.1e-41 166.4
Bpe13g00079 . 4 112 AS2 family AT3G27650 66.1 1.1e-38 156.4
Bpe12g00665 BCT,CCT,ECH 12 137 AS2 family AT5G63090 86.5 7.4e-58 220.3
Bpe07g00855 CCT,ECH 3 113 AS2 family AT5G63090 92.8 1.4e-56 216.1
Bpe13g00250 BCT,CCT,ECH 3 173 AS2 family AT5G63090 62.0 2.2e-54 208.8
Bpe11g01519 . 1 138 AS2 family AT5G63090 75.4 1.2e-52 203.0
Bpe02g01341 . 8 119 AS2 family AT5G63090 72.3 3.6e-44 174.9
Bpe14g00045 . 15 120 AS2 family AT5G63090 74.5 1.0e-43 173.3
Bpe13g00079 . 2 110 AS2 family AT5G63090 68.8 2.0e-39 159.1
Bpe04g01798 . 4 106 AS2 family AT5G63090 70.9 2.6e-39 158.7
Bpe15g01174 . 4 106 AS2 family AT5G63090 69.9 1.3e-38 156.4
Bpe11g01042 . 12 122 AS2 family AT5G63090 64.0 1.9e-37 152.5
Bpe15g00346 . 2 110 AS2 family AT5G63090 66.1 4.2e-37 151.4
Bpe04g01798 . 3 115 AS2 family AT2G30130 90.3 2.1e-55 212.2
Bpe15g01174 . 3 115 AS2 family AT2G30130 89.4 4.6e-55 211.1
Bpe08g01408 . 3 117 AS2 family AT2G30130 83.5 5.3e-51 197.6
Bpe11g01042 . 11 127 AS2 family AT2G30130 70.1 4.8e-44 174.5
Bpe14g00045 . 10 117 AS2 family AT2G30130 65.7 3.0e-38 155.2
Bpe12g00665 BCT,CCT,ECH 17 120 AS2 family AT2G30130 68.3 1.1e-37 153.3
Bpe02g01341 . 9 116 AS2 family AT2G30130 64.8 2.6e-37 152.1
Bpe11g01042 . 1 170 AS2 family AT1G31320 71.9 3.7e-64 241.1
Bpe15g01174 . 2 113 AS2 family AT1G31320 71.4 2.5e-44 175.3
Bpe04g01798 . 2 113 AS2 family AT1G31320 69.6 1.2e-43 172.9
Bpe08g01408 . 5 113 AS2 family AT1G31320 70.6 3.4e-41 164.9
Bpe12g00665 BCT,CCT,ECH 18 139 AS2 family AT1G31320 57.5 1.3e-37 152.9
Bpe02g01341 . 15 129 AS2 family AT1G31320 62.7 3.9e-37 151.4
Bpe14g00045 . 16 130 AS2 family AT1G31320 62.7 3.9e-37 151.4
Bpe04g01761 . 9 131 AS2 family AT1G31320 59.3 3.9e-37 151.4
Bpe15g01073 . 57 186 AS2 family AT2G28500 71.5 1.6e-46 183.0
Bpe08g01337 . 35 204 AS2 family AT2G28500 54.9 6.8e-45 177.6
Bpe04g01869 . 57 210 AS2 family AT2G28500 52.9 4.4e-44 174.9
Bpe11g00799 . 39 202 AS2 family AT2G28500 53.3 4.6e-41 164.9
Bpe15g01174 . 5 119 AS2 family AT2G28500 64.3 8.1e-38 154.1
Bpe04g01798 . 5 119 AS2 family AT2G28500 61.7 8.9e-37 150.6
Bpe08g01337 . 12 204 AS2 family AT1G07900 59.7 1.9e-48 189.1
Bpe15g01073 . 31 229 AS2 family AT1G07900 51.5 1.1e-45 179.9
Bpe11g00799 . 33 202 AS2 family AT1G07900 59.4 1.3e-41 166.4
Bpe04g01869 . 51 210 AS2 family AT1G07900 51.4 2.9e-41 165.2
Bpe11g01042 . 1 170 AS2 family AT1G16530 50.3 1.9e-41 165.6
Bpe15g01174 . 5 110 AS2 family AT1G16530 66.4 3.7e-37 151.4
Bpe04g01761 . 3 134 AS2 family AT2G30340 74.2 2.3e-52 202.6
Bpe15g01223 . 1 159 AS2 family AT2G30340 61.8 8.7e-52 200.7
Bpe08g01420 . 15 141 AS2 family AT2G30340 76.4 3.3e-51 198.7
Bpe15g01223 . 27 210 AS2 family AT2G40470 67.4 1.3e-60 229.6
Bpe04g01761 . 4 149 AS2 family AT2G40470 76.7 7.9e-58 220.3
Bpe08g01420 . 15 150 AS2 family AT2G40470 74.3 1.7e-52 202.6
Bpe11g01042 . 12 137 AS2 family AT2G40470 61.1 6.3e-39 157.5
Bpe15g01174 . 5 123 AS2 family AT2G40470 63.3 6.9e-38 154.1
Bpe04g01798 . 5 119 AS2 family AT2G40470 67.0 9.1e-38 153.7
Bpe08g01408 . 5 131 AS2 family AT2G40470 61.4 1.5e-37 152.9
Bpe15g01233 . 4 167 AS2 family AT3G11090 56.9 1.3e-45 179.5
Bpe06g00431 CCT 1 122 AS2 family AT2G42440 78.2 5.1e-51 198.0
Bpe10g00374 CCT 1 132 AS2 family AT2G42440 72.7 7.4e-50 194.1
Bpe09g00327 . 1 139 AS2 family AT2G42440 68.1 4.8e-49 191.4
Bpe09g00325 . 8 126 AS2 family AT2G42440 66.1 3.5e-39 158.7
Bpe05g00910 . 8 110 AS2 family AT2G42440 68.9 2.2e-38 156.0
Bpe06g00431 CCT 4 122 AS2 family AT3G58190 82.6 7.6e-54 207.2
Bpe10g00374 CCT 4 124 AS2 family AT3G58190 81.8 6.4e-53 204.1
Bpe09g00327 . 4 111 AS2 family AT3G58190 82.4 1.2e-48 189.9
Bpe09g00325 . 8 119 AS2 family AT3G58190 73.2 1.6e-43 172.9
Bpe05g00910 . 4 141 AS2 family AT3G58190 59.3 8.1e-40 160.6
Bpe04g00843 . 30 128 AS2 family AT3G58190 76.8 1.4e-39 159.8
Bpe05g00911 . 25 125 AS2 family AT3G58190 73.3 1.8e-39 159.5
Bpe03g00906 . 7 99 AS2 family AT3G58190 78.5 2.4e-39 159.1
Bpe06g00431 CCT 1 139 AS2 family AT2G31310 58.3 1.4e-40 162.9
Bpe09g00325 . 9 205 AS2 family AT2G42430 53.8 3.1e-48 188.7
Bpe10g00374 CCT 3 109 AS2 family AT2G42430 74.8 1.2e-42 170.2
Bpe06g00431 CCT 3 109 AS2 family AT2G42430 74.8 4.4e-42 168.3
Bpe03g00906 . 8 100 AS2 family AT2G42430 84.9 2.2e-41 166.0
Bpe05g00911 . 25 125 AS2 family AT2G42430 74.3 2.7e-39 159.1
Bpe05g00910 . 8 113 AS2 family AT2G42430 67.0 8.5e-38 154.1
Bpe04g00843 . 30 128 AS2 family AT2G42430 73.7 8.5e-38 154.1
Bpe09g00327 . 3 146 AS2 family AT2G42430 52.8 1.1e-37 153.7
Bpe04g01365 . 9 119 AS2 family AT2G42430 66.7 1.1e-37 153.7
Bpe04g00843 . 30 235 AS2 family AT4G00220 58.8 5.0e-56 214.5
Bpe05g00911 . 25 221 AS2 family AT4G00220 56.5 5.5e-55 211.1
Bpe05g00910 . 12 99 AS2 family AT4G00220 81.8 3.2e-39 158.7
Bpe05g00911 . 25 223 AS2 family AT2G45420 62.9 8.8e-65 243.8
Bpe04g00843 . 30 236 AS2 family AT2G45420 63.1 9.7e-64 240.4
Bpe05g00910 . 12 121 AS2 family AT2G45420 74.5 1.1e-46 183.7
Bpe06g00431 CCT 7 109 AS2 family AT2G45420 75.7 2.1e-42 169.5
Bpe04g01365 . 10 111 AS2 family AT2G45420 78.4 3.6e-42 168.7
Bpe10g00374 CCT 7 109 AS2 family AT2G45420 72.8 5.2e-41 164.9
Bpe09g00325 . 13 114 AS2 family AT2G45420 76.5 2.0e-40 162.9
Bpe09g00327 . 7 109 AS2 family AT2G45420 68.9 2.2e-39 159.5
Bpe03g00906 . 12 99 AS2 family AT2G45420 83.0 1.8e-38 156.4
Bpe04g01365 . 10 123 AS2 family AT3G03760 84.2 2.2e-50 196.1
Bpe05g00911 . 25 124 AS2 family AT3G03760 80.0 5.0e-39 158.3
Bpe04g00843 . 30 127 AS2 family AT3G03760 80.6 5.0e-39 158.3
Bpe10g00374 CCT 2 111 AS2 family AT3G03760 69.1 8.6e-39 157.5
Bpe06g00431 CCT 2 102 AS2 family AT3G03760 74.3 2.5e-38 156.0
Bpe09g00325 . 9 114 AS2 family AT3G03760 73.6 3.3e-38 155.6
Bpe09g00327 . 2 118 AS2 family AT3G03760 62.4 4.3e-38 155.2
Bpe05g00910 . 8 113 AS2 family AT3G03760 69.8 2.1e-37 152.9
Bpe05g00910 . 5 121 AS2 family AT4G00210 75.2 2.6e-46 182.2
Bpe05g00911 . 25 137 AS2 family AT4G00210 73.5 1.6e-43 172.9
Bpe04g00843 . 30 135 AS2 family AT4G00210 72.9 1.5e-41 166.4
Bpe09g00325 . 8 114 AS2 family AT4G00210 67.3 2.6e-38 155.6
Bpe10g00374 CCT 2 107 AS2 family AT4G00210 67.0 3.4e-38 155.2
Bpe06g00431 CCT 2 102 AS2 family AT4G00210 70.3 5.9e-38 154.5
Bpe09g00327 . 2 107 AS2 family AT4G00210 65.1 7.7e-38 154.1
Bpe04g01365 . 10 111 AS2 family AT4G00210 71.6 5.0e-37 151.4
Bpe05g00910 . 8 118 AS2 family AT2G45410 82.0 4.4e-50 194.5
Bpe05g00911 . 25 206 AS2 family AT2G45410 51.6 5.1e-46 181.0
Bpe04g00843 . 30 131 AS2 family AT2G45410 73.5 9.0e-43 170.2
Bpe09g00325 . 9 114 AS2 family AT2G45410 66.0 4.3e-37 151.4
Bpe04g01365 . 10 111 AS2 family AT2G45410 67.6 7.4e-37 150.6
Bpe09g00327 . 1 120 AS2 family AT5G06080 61.0 3.1e-37 151.8
Bpe10g00374 CCT 1 107 AS2 family AT5G06080 67.3 3.1e-37 151.8
Bpe15g00729 . 16 148 AS2 family AT1G06280 59.7 2.1e-37 152.5
Bpe02g01403 . 1 172 AS2 family AT1G68510 63.8 4.9e-59 224.6
Bpe14g00112 . 1 255 AS2 family AT1G68510 50.8 4.1e-58 221.5
Bpe13g00123 . 1 104 AS2 family AT1G68510 64.4 3.0e-40 162.2
Bpe02g01779 . 2 132 AS2 family AT1G68510 58.8 7.3e-39 157.5
Bpe02g01778 BCT 1 104 AS2 family AT1G68510 66.3 9.6e-39 157.1
Bpe05g00043 BCT 1 104 AS2 family AT1G68510 64.4 1.1e-37 153.7
Bpe02g01403 . 1 138 AS2 family AT1G67100 81.6 7.8e-65 243.8
Bpe14g00112 . 1 158 AS2 family AT1G67100 73.8 3.0e-64 241.9
Bpe13g00123 . 1 104 AS2 family AT1G67100 70.2 3.4e-44 175.3
Bpe02g01779 . 2 112 AS2 family AT1G67100 63.1 8.7e-40 160.6
Bpe05g00043 BCT 1 104 AS2 family AT1G67100 65.4 1.9e-39 159.5
Bpe02g01778 BCT 1 104 AS2 family AT1G67100 62.5 2.8e-38 155.6
Bpe02g01403 . 1 291 AS2 family AT3G02550 58.2 5.9e-77 284.3
Bpe14g00112 . 1 288 AS2 family AT3G02550 56.1 8.5e-76 280.4
Bpe13g00123 . 1 122 AS2 family AT3G02550 61.5 3.0e-41 165.6
Bpe05g00043 BCT 1 104 AS2 family AT3G02550 67.3 1.8e-38 156.4
Bpe02g01779 . 2 106 AS2 family AT3G02550 64.8 2.7e-37 152.5
Bpe02g01778 BCT 1 117 AS2 family AT3G02550 57.3 1.0e-36 150.6
Bpe13g00123 . 1 229 AS2 family AT5G67420 56.9 2.2e-65 245.7
Bpe05g00043 BCT 1 138 AS2 family AT5G67420 61.1 6.0e-47 184.5
Bpe02g01779 . 3 139 AS2 family AT5G67420 60.8 9.6e-45 177.2
Bpe02g01403 . 3 122 AS2 family AT5G67420 65.0 1.3e-44 176.8
Bpe02g01778 BCT 1 138 AS2 family AT5G67420 60.4 2.1e-44 176.0
Bpe14g00112 . 3 122 AS2 family AT5G67420 63.3 1.8e-43 172.9
Bpe13g00123 . 1 228 AS2 family AT3G49940 60.4 1.7e-70 262.7
Bpe05g00043 BCT 1 138 AS2 family AT3G49940 64.3 2.7e-47 185.7
Bpe02g01779 . 3 143 AS2 family AT3G49940 60.3 1.6e-44 176.4
Bpe02g01778 BCT 1 141 AS2 family AT3G49940 58.9 1.8e-43 172.9
Bpe02g01403 . 3 112 AS2 family AT3G49940 68.2 6.8e-43 171.0
Bpe14g00112 . 3 112 AS2 family AT3G49940 66.4 9.8e-42 167.2
Bpe13g00123 . 1 229 AS2 family AT4G37540 55.9 3.6e-65 245.0
Bpe05g00043 BCT 1 108 AS2 family AT4G37540 78.7 2.2e-46 182.6
Bpe02g01403 . 3 113 AS2 family AT4G37540 65.8 1.6e-41 166.4
Bpe02g01779 . 3 115 AS2 family AT4G37540 67.3 4.7e-41 164.9
Bpe02g01778 BCT 1 104 AS2 family AT4G37540 70.2 1.4e-40 163.3
Bpe14g00112 . 3 113 AS2 family AT4G37540 64.0 2.4e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012832 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22611 PF03195 LOB 3.70E-32 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00729 Bpe_Chr15 FPKM 0.0 0.0 0.295205 0.0 0.0 0.0 0.17809 0.0 0.193767 0.268617