Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00784 ATGGGTAAGGTAGTGGAGAGGAGGAAGAAGAAGAAAGGACGGCCCTCTCTATTAGATCTTCAAAAACGCACAATCAAAGAACAGCAGCAGCTCCAGCAGATAAGCTCCAACCATAACTTGGACACTCGCTCTAGCCCTAATTCCAGAATTGCCACTACCGTTCGGCGATCTACTCGCGGAAATACCTTCTCCAACACGCTCTCTCAGGAGGAGGAGGAGGAGGGTTTTGACGACCCGGAAGACGACGAAGAATTGACTGGGAAGCACCGTGAAAAGAAGCTCAAGCTTGTCCTCCGATTGACATCTCAAAAATCTTCTTTGAATTCGTCGTCTTTAAATTCGGGGGGTCTGGATTCGAATGCGGAGGTGGATGACGACGAGTATGGTAATAAGAAGCGAAAGATCAATGCAATCGGAGATGGATCTGGGCTCGGAAACCTCGAAAAGGTATGGAGGTCACTGTTGGATTTTGGACCCCCGACTCCTTTGCCGGATGAGAAGCTTTTACTGTTCATCCTGGACAGGCTTCAAAAGTGCGTCTTTAAGCCCATCAGCTTGCTTTTTTGTCGTTTCGATGTGATTTTTAGAATTTCATTTCATTTCAGGAAGGACACATATGGTGTGTTTTCTGAACCAGTGGACCCGGAGGAGCTTCCTGATTACCATGAAGTTATTAAGAACCCGATGGATTTTGCGACGGTGAGAAAGAAGCTTGCCAGCAGAGCTTACGCCAAATTGGAAGAGTTCGAGAAAGATGTTGTCTTAATCTGCTCGAATGCAATGCAGTATAATGCTCCAGATACCATCTATTTTAGGCAGGCACGATCCATACTGGAATTAGCAAAAAAGAGCTTCAGGAATTTAAGACAAGATAGTGATGATAATGATCCAGAACCTAAAGTAATCAGGAGAGGAAGACCACCGACTAAGAATTTGAAACAGCCAATCGGTCAGTCATTCTCCGATCGCGCTAGTTCAGAGTTTTCGGATGCTACCCTTGCTACTGGTGAAGAAAACAGATATTATGATCTGAGAAAAGGACCTCACCTCTTGGAGAAGGCTGCTTCGGGAGAGTTTTTTGGGAAATTCCCCGGTTCTCGCATTACTGACGCCAATTCAAATTGGTTGAATGAAAACAGATTCGAGAGAAATAATGATTTTGCTGGTTCTTTGATGAAAAGTTACCCCACAAAGCAAGGGAAAAAACAGATTGTACCAGATGAGAACAGGCGGAACACATATAAGCAATTCCATTTATCAGATGTTGGACTGGAGTCGTCAGTTATGAGTACATTTACGCGAGAGAGAAAGCAACTAATGGCTGTGGGGCTTCACTTGGACCATGGTTACGCCAGGAGCCTTGCTCGATTTGCTGCCAATCTTGGGTCTATTGCTTGGAAAGTTGCTTCTAAGAAAATCGAAAAATCCTTGCCTGTGGGAGGCAAGTTTGGCCATGGTTGGGTTGGAGAAAACGATGTCATTCCAACCAGACCATTGCTATCAACATCAGCTGAAGGCCAATTATCAATATTGCTGCCATTGCTTGGTCAGAATAACTCATCTTCAGCTGCAGCTTCTTCCACTCCTGAGATTAAGGATGTTAGTTTACCCAAAATTCCCAACGAAAACGCATCCTCGGAGAAGGATGGACCTGCCATGGATTCCAGCTTAGAAAAAAATATAAGCAAGCCTCCTACCGAATCTCCTGAACCTCTCACCGGAAAAGGGTATAACATCCATAACAGCAGTATGAATCCAATTCGGACCAAACCTTCATTTCAGGGTCATAAGAGTCATTTGCAACCTGGTCTGAATGGATGTAGCAGTAATAGCGCCTATGGCTCCAACCCTTCAGATCAACTAGCAAAACTAATCAAATCAGGCAGTTTGAACTTGCAGCCATCTCAAATGCTTCAGACAATATCTAGAACTACTAACACTGTCTCCACCACGACACCGAGCAGTGTCATTCGACCCAACCCCGAGTTTTCTCATAGTACAGGCAAGATGAATTCAGGTACTTTGTTTAAACGCGACGAGGCGTTGGCACCTCAAACCAAAGTTGGTCCAGTTCCTCCTGATCTTAATGTCGGATTTAAGTCACCAGGGTCACCTATCTCCAGCCGAGTTGACTCAGCAGCACGGCCTGACTTAGCGTTGCAACTCTGA 2169 45.14 MGKVVERRKKKKGRPSLLDLQKRTIKEQQQLQQISSNHNLDTRSSPNSRIATTVRRSTRGNTFSNTLSQEEEEEGFDDPEDDEELTGKHREKKLKLVLRLTSQKSSLNSSSLNSGGLDSNAEVDDDEYGNKKRKINAIGDGSGLGNLEKVWRSLLDFGPPTPLPDEKLLLFILDRLQKCVFKPISLLFCRFDVIFRISFHFRKDTYGVFSEPVDPEELPDYHEVIKNPMDFATVRKKLASRAYAKLEEFEKDVVLICSNAMQYNAPDTIYFRQARSILELAKKSFRNLRQDSDDNDPEPKVIRRGRPPTKNLKQPIGQSFSDRASSEFSDATLATGEENRYYDLRKGPHLLEKAASGEFFGKFPGSRITDANSNWLNENRFERNNDFAGSLMKSYPTKQGKKQIVPDENRRNTYKQFHLSDVGLESSVMSTFTRERKQLMAVGLHLDHGYARSLARFAANLGSIAWKVASKKIEKSLPVGGKFGHGWVGENDVIPTRPLLSTSAEGQLSILLPLLGQNNSSSAAASSTPEIKDVSLPKIPNENASSEKDGPAMDSSLEKNISKPPTESPEPLTGKGYNIHNSSMNPIRTKPSFQGHKSHLQPGLNGCSSNSAYGSNPSDQLAKLIKSGSLNLQPSQMLQTISRTTNTVSTTTPSSVIRPNPEFSHSTGKMNSGTLFKRDEALAPQTKVGPVPPDLNVGFKSPGSPISSRVDSAARPDLALQL 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18097867 18102501 + Bpe001711.2 Bpe15g00784 116463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00784 722 MobiDBLite consensus disorder prediction 519 619 - -
Bpe15g00784 722 MobiDBLite consensus disorder prediction 644 722 - -
Bpe15g00784 722 SMART bromo_6 185 290 IPR001487 GO:0005515
Bpe15g00784 722 MobiDBLite consensus disorder prediction 28 88 - -
Bpe15g00784 722 MobiDBLite consensus disorder prediction 644 673 - -
Bpe15g00784 722 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 722 - -
Bpe15g00784 722 MobiDBLite consensus disorder prediction 288 305 - -
Bpe15g00784 722 MobiDBLite consensus disorder prediction 312 329 - -
Bpe15g00784 722 PRINTS Bromodomain signature 234 252 IPR001487 GO:0005515
Bpe15g00784 722 PRINTS Bromodomain signature 204 217 IPR001487 GO:0005515
Bpe15g00784 722 PRINTS Bromodomain signature 252 271 IPR001487 GO:0005515
Bpe15g00784 722 PRINTS Bromodomain signature 218 234 IPR001487 GO:0005515
Bpe15g00784 722 MobiDBLite consensus disorder prediction 28 69 - -
Bpe15g00784 722 MobiDBLite consensus disorder prediction 288 329 - -
Bpe15g00784 722 Gene3D - 197 302 IPR036427 GO:0005515
Bpe15g00784 722 SUPERFAMILY Bromodomain 198 293 IPR036427 GO:0005515
Bpe15g00784 722 MobiDBLite consensus disorder prediction 575 619 - -
Bpe15g00784 722 MobiDBLite consensus disorder prediction 106 125 - -
Bpe15g00784 722 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 722 - -
Bpe15g00784 722 CDD Bromodomain 201 283 - -
Bpe15g00784 722 ProSiteProfiles Bromodomain profile. 209 271 IPR001487 GO:0005515
Bpe15g00784 722 Pfam Bromodomain 201 275 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00784 K22184 BRD9; bromodomain-containing protein 9 - qsu:111985563 620.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00149 Bpe15g00784 CCT
Bpe12g00149 Bpe15g00784 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00784 Bpe-Chr15:18097867 Bpe08g00614 Bpe-Chr8:4837509 8.82E-10 dispersed
Bpe03g00892 Bpe-Chr3:28704469 Bpe15g00784 Bpe-Chr15:18097867 8.18E-14 transposed
Bpe10g00389 Bpe-Chr10:11457785 Bpe15g00784 Bpe-Chr15:18097867 4.82E-13 transposed
Bpe12g00149 Bpe-Chr12:1086321 Bpe15g00784 Bpe-Chr15:18097867 0 wgd
Bpe15g00784 Bpe-Chr15:18097867 Bpe04g00283 Bpe-Chr4:1813579 1.41E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00784 Bpe_Chr15 FPKM 17.735083 19.615507 13.004725 12.097316 22.461493 21.424925 22.384842 23.697294 22.589642 22.075317