Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe15g00786 | ATGAGCCCAGCAACTAGGCTCACCAAAGCTCTGCTCCTTAACACCGCCAACCCGAAACTTGCATGGTGCCTCGTCAGGCGCATTCTCTCGTCACCCTCCTCGACCCCTCTATCCCTCCCCTCCATATCCGCCATTGCTCGGATTCTTATTCCTCGCAGAATGCTCCGCGAAATTGACCATCTCCACCACCTTCTACTCCTCTCGCACCACCTTGACACTGCCCTTCTTTCTCTTTTTTGTTTGGTCCGGATGTTGGCTTTGTCTGGTCTCCCTGATCAAGCTCTTTCCCATTTTAAAACCCTTAGATCCCGGTTTCCGGAAAACCCTCCTCCCATTTTTTTGTATAATTTGCTCCTCCAGAACTTTCTGAAGAAGAATTCTGCAGACTCTGTCACTTGGCTGTATAAGGATATGATTCTTGCTAAGGTTTCTCCTGAAACTTACACTTTCAATCTTTTGATTTGTGCCTTATGTTGTTCGGGTCAGATAGAAGCTGCAAGGGAGGTGTTTGATAAAATGTCTGAGAAGGGGTGTGAACCAAATGCTTACACTATTGAGATTTTGGTTCGTGGGTATTGTAAAGCCAATCTTGATAACCGAGGGTTGGAACTTGTGAATGAGTTAAGGGGTTGTGGTGTTTTGCCTAGTAATGTTGTCTACAATACTTTGATATCTAGTTTTTGCAGGGAAGGTCGGACCGATAAGGCTGAGATGTTGGTCGAGTTAATGAAAGAGGATGGTCTGTTTCCAGATGTTGTTACTTTCAATTCAAGAATAGCAGCTCTTTGTAGAGATGGGCAAATTTTAGAAGCGTCTAGAATTTTTAGGGATATGCAAATCGATGATTATTTGGGGTTGCCGCAGCCTAATGTTGTCACCTATAATATAATGCTTAAGGGGTTTTGTGATATAGGAATGTTAGCGGAAGCAAAGAGTTTGTTTGAATCTATGAGAGGCATTGGAGATTTCTCGAACTTGGAAAGTTATAATATATGGTTGTTGGGTTTGGTTAGGAACGGGAAGCTTTTGGAGGCACGCTCGATTCTTAAAGAGATGGCTGATGAAGGGATAGAACCTAGTGTTTGGTCATATAATATTGTGCTGAATGGACTTTGTAAAAGCGGACTACTTTTTGATGCTGTAAATTTAATAAGCTTAATGAGAATTAATGGCTTATATCCAGATATAGTAACCTATAGCACCTTATTACATGGATACTGCCATAAGAGAAAGGTACTTGAAGCTAGTCGCCTTCTTCATCAAATGACTCAAAATGGTTATTCTCCAAATAATTATACATGTAACATTTTGCTTCACAGTCTTTGGAAAGAAGGGAGAACATCAGAAGCAGAGAAATTTCTGCAAAAGATGAACGAGAGAGATAATATCTTGGACACCACAACATGCAATATTGTGATTGATGGCCTTTGTAAAATTGGGAAAGTGGACGAAGCTATTGAAATGATGAGCAGGATGTGGACTCATGGACAGGCTGCCCTTGATAGTGCAGGAAACTCTCTTACATGCTTGTTTGACAATAGTGATGATGGGAAGAAATGTAGGCCTGATTTGATTACATATTCAACAATAATTAAAGCGCTGTGCAAGTCTGGGAGACTTGATGAGGCGAAAAAAAAGTTTGCTGAGATGTCTGGGAAAGGTTTGCATCCTGATACGATGATCTTCAATATTTTCATTCTGAGTTACTGTAAAGAGGGTAAAATATCTTCTGCCTTTCGAGTTTTGAAGGACATGGAAAAAAAAGGTTGCAACAAGAGCATTCATACTTATAATTCGCTGATACTGGGCTTAGGTAGAAAAAACCAAATATTTGAAATGTATGGTCTTTTAAATGAGATGAGAGAAAGAGGTATTTCTCCTAATGTTTGGACATATAATAATATGATCAGCAGTTTATCTGAAGGAGGGAGACTTGGAGATGCCGCTTCACTTTTGGATGAAATGCTGGAAAAGGAAATATTTCCTAATATTTCTTCCTACAGTATTCTAATCAAAGCCTTTTGCAAATCATGTGATTTTGGAGCAGCCATGGAGATATTCGAGATAGCCTTGACTGTATGTGGCTACCAGCAACCCTTGTATAGCTTGATGTTTAACGAGTTACTTTCTGGAGGAGAAGTTTCCAACGCAAAAGAATTGTATGAGGTTGCATTAGATAGATCTTTTGACCTAGATAACTTCCTGTATAAGGATCTCATTGAAAAACTTTGCTTTGATGAAAAGTTGGAGGATGCTTGTTTAGTTCTTCATAAGATGATCGACAAAGGGTATGGATTTGATCCTGCACCGTTGATGTTAGTAATCGATGAACTAGGAAAGAGGGGGAACAAACGTGGGGCTAATGAACTTGCAGAAAAGAAGATTAGAATGACTTCAGAGAGTAGGGTTGTAAATAAGATTCATCGAAGCCAGAGGAAGATCAGTGGTAAAAAGTCAAGTAAATATGAAGAAAGTGATTGGCACAATATAATACACAGTGATGATGGAAGTGGAATTGCTCAGAAAACACTTAATCGGGTGCAGAAAGGCTGGGGTCAGGGTAACATATTAAGGCCGCAGCACCAGAAAAATGGCATGCTTGATTCCTGGGATTCTGATTTCTAG | 2625 | 40.08 | MSPATRLTKALLLNTANPKLAWCLVRRILSSPSSTPLSLPSISAIARILIPRRMLREIDHLHHLLLLSHHLDTALLSLFCLVRMLALSGLPDQALSHFKTLRSRFPENPPPIFLYNLLLQNFLKKNSADSVTWLYKDMILAKVSPETYTFNLLICALCCSGQIEAAREVFDKMSEKGCEPNAYTIEILVRGYCKANLDNRGLELVNELRGCGVLPSNVVYNTLISSFCREGRTDKAEMLVELMKEDGLFPDVVTFNSRIAALCRDGQILEASRIFRDMQIDDYLGLPQPNVVTYNIMLKGFCDIGMLAEAKSLFESMRGIGDFSNLESYNIWLLGLVRNGKLLEARSILKEMADEGIEPSVWSYNIVLNGLCKSGLLFDAVNLISLMRINGLYPDIVTYSTLLHGYCHKRKVLEASRLLHQMTQNGYSPNNYTCNILLHSLWKEGRTSEAEKFLQKMNERDNILDTTTCNIVIDGLCKIGKVDEAIEMMSRMWTHGQAALDSAGNSLTCLFDNSDDGKKCRPDLITYSTIIKALCKSGRLDEAKKKFAEMSGKGLHPDTMIFNIFILSYCKEGKISSAFRVLKDMEKKGCNKSIHTYNSLILGLGRKNQIFEMYGLLNEMRERGISPNVWTYNNMISSLSEGGRLGDAASLLDEMLEKEIFPNISSYSILIKAFCKSCDFGAAMEIFEIALTVCGYQQPLYSLMFNELLSGGEVSNAKELYEVALDRSFDLDNFLYKDLIEKLCFDEKLEDACLVLHKMIDKGYGFDPAPLMLVIDELGKRGNKRGANELAEKKIRMTSESRVVNKIHRSQRKISGKKSSKYEESDWHNIIHSDDGSGIAQKTLNRVQKGWGQGNILRPQHQKNGMLDSWDSDF | 874 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 18115540 | 18118638 | + | Bpe001713.1 | Bpe15g00786 | 116465 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 468 | 496 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 595 | 629 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 148 | 182 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 432 | 461 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 666 | 688 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 525 | 559 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 292 | 318 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 328 | 361 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 561 | 591 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 397 | 430 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 631 | 663 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 396 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 218 | 252 | IPR002885 | - | |
| Bpe15g00786 | 874 | TIGRFAM | PPR: pentatricopeptide repeat domain | 253 | 279 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 593 | 627 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 216 | 250 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat | 288 | 318 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat | 465 | 492 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat | 519 | 551 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Bpe15g00786 | 874 | PANTHER | OS02G0132100 PROTEIN | 4 | 838 | - | - | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 611 | 848 | IPR011990 | GO:0005515 | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 628 | 662 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Bpe15g00786 | 874 | MobiDBLite | consensus disorder prediction | 855 | 874 | - | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat family | 215 | 256 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat family | 394 | 441 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat family | 327 | 373 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat family | 627 | 676 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat family | 145 | 194 | IPR002885 | - | |
| Bpe15g00786 | 874 | Pfam | PPR repeat family | 557 | 601 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 558 | 592 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | IPR002885 | - | |
| Bpe15g00786 | 874 | PANTHER | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED | 4 | 838 | - | - | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 284 | 354 | IPR011990 | GO:0005515 | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 181 | 215 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | IPR002885 | - | |
| Bpe15g00786 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | IPR002885 | - | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 508 | 610 | IPR011990 | GO:0005515 | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 445 | 507 | IPR011990 | GO:0005515 | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 52 | 196 | IPR011990 | GO:0005515 | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 355 | 444 | IPR011990 | GO:0005515 | |
| Bpe15g00786 | 874 | Gene3D | Tetratricopeptide repeat domain | 197 | 283 | IPR011990 | GO:0005515 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe15g00786 | - | - | - | pavi:110754663 | 1130.16 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe15g00786 | Bpe-Chr15:18115540 | Bpe11g00287 | Bpe-Chr11:2101404 | 2.81E-47 | dispersed | |
| Bpe10g00008 | Bpe-Chr10:197496 | Bpe15g00786 | Bpe-Chr15:18115540 | 5.51E-08 | transposed | |
| Bpe11g01419 | Bpe-Chr11:10555406 | Bpe15g00786 | Bpe-Chr15:18115540 | 1.50E-09 | transposed | |
| Bpe15g00786 | Bpe-Chr15:18115540 | Bpe07g00686 | Bpe-Chr7:13507856 | 2.16E-08 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g286 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Sed05g2175 | . | . | Bhi05g01588 | Tan02g0581 | Cmetu01g0188 | Lac12g0483 | Hepe02g0372 | . | . | Cla02g00351 | Cam02g0359 | Cec02g0360 | Cco02g0366 | Clacu02g0351 | Cmu02g0348 | Cre02g0679 | Cone12ag1274 | . | . | . | . | Csa07g00182 | . | Cme01g01150 | Blo04g00604 | . | . | Bda14g00645 | Bpe15g00786 | . | Bma03g00636 | . | . | . | . | . | . | . | Car19g00612 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi11g01282 | . | Chy01g00597 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012269 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 29 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bpe15g00786 | Bpe_Chr15 | FPKM | 7.589989 | 7.606345 | 14.221077 | 13.672541 | 12.321946 | 11.889289 | 13.56508 | 53.781212 | 57.057274 | 60.172848 |