Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00787 ATGGGTGCCGAGGGCGATTCTAGTGAGTCTAGAACAGGCGGTGACGGTGGAGAAGAGGTGGCGGTTAATATTCGCTGCTCGAACGGTACGAAAATTACGGTGAGGACGTGCCTCGACTCTACGGTTGGGGCCTTCAAAGTACTTGTAGCTCAGAATTCTGATTTTCCAGCTGATCAGCAGCGATTGATCTACAAAGGCCGCATATTGAAGGATGACCAGACCCTGTACAGTTATGGTATGCAGGCAGATCATACAATTCACATGGTTCGTGGTTTTGCCCCTACTGCATCAACGCCAATTGCTACAACCACTGGATCTGCTAACAACACTGCGGGTGTCACAAGAGGTGTTGGTTCCACTGATGGGGGAGCTTTAGGGAATGCAACACCTTTATTTCCTGGACTTGGTTTCAACCCACTAGGTGGAGGTGCATCATCTGGTTTATTTGGAGCTAGTCTACCAGAATTCGAGCAAGTGCAGCAACAACTGACTCAGAACCCAAACATGATGAGGGAAATAATGAACATGCCTGCCATTCAGAACCTAATGAATAATCCTGATTTGATGCGAAATTTAATTATGAGCAATCCTCAAATGCGGGAAATTATTGATAGAAATCCAGAACTTGGTCACATTCTTAATGATCCTGGTGTTCTCAGGCAGACTTTAGAAGCTGCCAGGAACCCAGAGCTTATGCGCGAGATTATGAGGAACACCGACAGGGCGATGAGTAATATTGAATCAAGTCCTGAAGGATTCAATATGCTGAGGCGTATGTATGAAAATGTCCAAGAGCCATTTATGAATGCTACAGCAATGGCTGGAAACAATGGAAATGATTTGCGTTCAAACCCATTTGCAGCTCTGTTAGGAAACACTGCTGGGGCCCAAGCTAGGGCTGGGTCTAATAATACTTCAGTTGCTAGTACTGAAACAAACACCGGGACTGCTGCTCCTAACATAAATCCACTTCCTAATCCATGGGGTGGTGCTTCTGGAGGAAATCAAGCAAACCTCACAATGCCCAATCTGGTAGGGGAATCTAGGACTCCTAGTATTGGTAATTTAGGAGGACTTGGTCTTCCTGATATGGAGCAGATGATGAGTGGTGGGCCTGATTTGGCCACGTTGAATCAGTTTTTGCAAAACCCCGCAATATCGCAGATGATGCAGAGCCTGCTCTCTAATCCTCAGTATATGAATGAGGTTCTCAGTCTCAACCCCCAGTTAAGGAACATGGCTGACATGATTCCTCAATTAAGAGAAATGATGCAAAATCCAGAGCTTCTTCGCCAGTTAACTAATCCCGAGACAATGCAGCAAATGCTATCCCTACAGCAATCACTTTTATCTCAGCTCGGTCAACAACAACCAACTCAAAGCCCATCCCAAACAAGGACTACAGGAACTCCCAATAATGCCGCATTAGAGCTGATGATGAACATGTTTGGTGGTCTTGGAGCTGGTGGAATGACCGTTCCTAGCAATCCCAATGTCGCCCCAGAAGAACTATACGCAACACAGCTCTCGCAGCTCCAAGAGATGGGGTTTTTCGACACTCAAGAGAACATAAGGGCCCTTCGAGCCACCGCAGGGAACGTCCATGCTGCAGTAGAGCGACTTTTGGGGAATCCTGGGCCATAA 1644 46.65 MGAEGDSSESRTGGDGGEEVAVNIRCSNGTKITVRTCLDSTVGAFKVLVAQNSDFPADQQRLIYKGRILKDDQTLYSYGMQADHTIHMVRGFAPTASTPIATTTGSANNTAGVTRGVGSTDGGALGNATPLFPGLGFNPLGGGASSGLFGASLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRNLIMSNPQMREIIDRNPELGHILNDPGVLRQTLEAARNPELMREIMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFMNATAMAGNNGNDLRSNPFAALLGNTAGAQARAGSNNTSVASTETNTGTAAPNINPLPNPWGGASGGNQANLTMPNLVGESRTPSIGNLGGLGLPDMEQMMSGGPDLATLNQFLQNPAISQMMQSLLSNPQYMNEVLSLNPQLRNMADMIPQLREMMQNPELLRQLTNPETMQQMLSLQQSLLSQLGQQQPTQSPSQTRTTGTPNNAALELMMNMFGGLGAGGMTVPSNPNVAPEELYATQLSQLQEMGFFDTQENIRALRATAGNVHAAVERLLGNPGP 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18123373 18126854 - Bpe001714.1 Bpe15g00787 116466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00787 547 SMART uba_6 505 543 IPR015940 -
Bpe15g00787 547 MobiDBLite consensus disorder prediction 450 471 - -
Bpe15g00787 547 Gene3D - 191 249 - -
Bpe15g00787 547 Gene3D - 487 547 - -
Bpe15g00787 547 SUPERFAMILY UBA-like 501 543 IPR009060 GO:0005515
Bpe15g00787 547 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Bpe15g00787 547 CDD UBA_PLICs 505 543 - -
Bpe15g00787 547 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 546 - -
Bpe15g00787 547 SMART CBM 142 183 IPR006636 -
Bpe15g00787 547 SMART CBM 407 442 IPR006636 -
Bpe15g00787 547 SMART CBM 354 403 IPR006636 -
Bpe15g00787 547 SMART CBM 196 235 IPR006636 -
Bpe15g00787 547 Gene3D - 17 105 - -
Bpe15g00787 547 SUPERFAMILY Ubiquitin-like 14 99 IPR029071 -
Bpe15g00787 547 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 499 544 IPR015940 -
Bpe15g00787 547 CDD Ubl_Dsk2p_like 20 92 - -
Bpe15g00787 547 SMART ubq_7 20 91 IPR000626 GO:0005515
Bpe15g00787 547 PANTHER UBIQUILIN 1 546 - -
Bpe15g00787 547 MobiDBLite consensus disorder prediction 300 321 - -
Bpe15g00787 547 Pfam UBA/TS-N domain 505 541 IPR015940 -
Bpe15g00787 547 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00787 K04523 UBQLN, DSK2; ubiquilin - qsu:112012853 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00787 Bpe-Chr15:18123373 Bpe09g00191 Bpe-Chr9:1327392 1.65E-06 dispersed
Bpe12g00148 Bpe-Chr12:1069015 Bpe15g00787 Bpe-Chr15:18123373 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01154 . . . . Bpe15g00787 . . Bma08g00719 . . . Cma11g01337 . . . . . . . . . . . . . . . . . . . . . Chy01g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00787 Bpe_Chr15 FPKM 1.236018 1.005827 2.153853 1.528538 1.047127 0.0 1.534986 7.72293 8.212183 11.144302