Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00799 ATGAAGGAGCGAAATACTGTAACGTGGAATTCAATGTTGAGTGGGTACGTCAAGAAGAGGGAGATAACTAGAGCACGTAAACTGTTTGATGAAATTCCTGAAAGAGATATTGTGTCGTGGAACTTGATGATATCTGGTTATATTTCGTGCGGTGGAATCAATTACATTGAGGCTGGCAGGAGATTGTTTGATCAAATGCCGAAAAGAGATTGTGTCTCATGGAATACAATGATTAGTGGGTATGCTCGGAATGGGATGATGGATTTGGCAATCAATATTTTCAATAGCATGCCCGAAAAAAATGTCATCTCCTGGAATGCTATGATTTCTGGGTTTCTACAAAATGGTAATGTTGGAAGAGCAATTGAGTTTTTTCAGAGGATGCCAGAACGAGATTCTGTTTCTCTCAGTGCTCTTGTATCAGGTCTTATTCAAAATGATGAATTAGATGAAGCTGCTAGAATTCTGCCTCAGATTGCCGGGATGAATGATGGAAAAGAAGATTTGACTCATGCTTATAACACTTTGATAGCTGGTTATGGCCAGAAAGGAATGGTTAAAGAAGCTCAACGTCTGTTCAATGAGATACCATCAAAGAAAGAAGATGTTGGCAATTTTCAAAGAAATATTATATCGTGGAACTCAATGATCATGGGATATGTTAAAGTGGGTGACATTCATTCTGCAAGGGAACTTTTCAATCAAATGACCGAACGGGATACTTTCTCATGGAATACAATGATCAGTGGATACGTTCAAAAGTTGGAAATGAAAGAGGCCGTAAAACTCTTTGATGATATGCCAAATCCTGATACGCCTACTTGGAATATGATGATCTCCGGTTTTGCTGAGACTGGTTGTTTGGATCTAGCTCATGTTTTCTTCAGGAGGATGTCCCAGAGAAGCACAATCTCATGGAATTCCATGATAGCAGCATACGAGAAAAATAAAGATTATAAAAATGCAGTTGAGCTCTTTATGGAAATGCAAAATGAAGGAGAGAAGCCTGATCGACATACATTATCCTCAGTTCTGAGTGTATGCGCTGGACTGGTTGATCTATTCTTAGGGATGCAGATTCATCAGCTAATTACGAAAGAATTTCTTGCAGACAAGCCCATAAACAATGCTCTTATTACCATGTATTCAAAATGCGGGGCAATTATGGAGGCTCGAGTTGTTTTTGATGAGACAAGACTGCAGAAAGACGTCATTTCTTGGAATGCAATGATTGGAGGATATGCGTCTCACGGCTATGCTTCAGAGTCTTTGGAACTTTTTAGATTGATGAAGCAGTATAAGGTCGAACCCACTTATATCACTTTCATTTCTGTTCTAAATGCTTGTGCTCATGCTGGGCTCGTAGAAGAAGGTCAAAAGCAATTCAAATCAATGATCAATGAATATAGTATCGAACCACGGGTTGAACATTTTGCCTCCCTTGTGGACATTTTGGGTCGTCATGGACAGCTTGAGGAGGCTTTGAATTTAATCAATCGGATGCCATGTGAACCAGATAAGACTGTTTGGGGTGCATTACTCAGTGCTTCCAGAATCCATGATAATGTAGATATTGCTCGTATTGCTGCCGAAGCATTGATGAGACTTGAATCGGAAAGTTCTGCTCCATATGTATTGCTGTACAATATGTATGCTGATGCTGGAAATTGGAATAAAGCTGAAGAAGTGAGGGCAATGATGGAGATGAATAATGTAAAGAAGCAACCAGGATACAGTTGCGTGGACTCTTCTAATGGCTGA 1761 39.69 MKERNTVTWNSMLSGYVKKREITRARKLFDEIPERDIVSWNLMISGYISCGGINYIEAGRRLFDQMPKRDCVSWNTMISGYARNGMMDLAINIFNSMPEKNVISWNAMISGFLQNGNVGRAIEFFQRMPERDSVSLSALVSGLIQNDELDEAARILPQIAGMNDGKEDLTHAYNTLIAGYGQKGMVKEAQRLFNEIPSKKEDVGNFQRNIISWNSMIMGYVKVGDIHSARELFNQMTERDTFSWNTMISGYVQKLEMKEAVKLFDDMPNPDTPTWNMMISGFAETGCLDLAHVFFRRMSQRSTISWNSMIAAYEKNKDYKNAVELFMEMQNEGEKPDRHTLSSVLSVCAGLVDLFLGMQIHQLITKEFLADKPINNALITMYSKCGAIMEARVVFDETRLQKDVISWNAMIGGYASHGYASESLELFRLMKQYKVEPTYITFISVLNACAHAGLVEEGQKQFKSMINEYSIEPRVEHFASLVDILGRHGQLEEALNLINRMPCEPDKTVWGALLSASRIHDNVDIARIAAEALMRLESESSAPYVLLYNMYADAGNWNKAEEVRAMMEMNNVKKQPGYSCVDSSNG 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18206584 18208344 + Bpe024581 Bpe15g00799 116478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00799 586 PANTHER OS07G0578800 PROTEIN-RELATED 1 582 IPR045215 GO:0003723|GO:0009451
Bpe15g00799 586 Pfam E motif 520 581 IPR046848 -
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Bpe15g00799 586 SUPERFAMILY TPR-like 81 267 IPR011990 GO:0005515
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 72 102 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 274 301 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 211 240 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 242 267 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 172 199 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 103 132 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 7 38 IPR002885 -
Bpe15g00799 586 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Bpe15g00799 586 Gene3D Tetratricopeptide repeat domain 168 299 IPR011990 GO:0005515
Bpe15g00799 586 Gene3D Tetratricopeptide repeat domain 370 583 IPR011990 GO:0005515
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 103 131 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 72 102 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 172 199 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 480 502 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 274 301 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 376 397 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 211 239 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 7 37 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat 38 69 IPR002885 -
Bpe15g00799 586 Gene3D Tetratricopeptide repeat domain 300 361 IPR011990 GO:0005515
Bpe15g00799 586 Pfam PPR repeat family 302 349 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat family 240 268 IPR002885 -
Bpe15g00799 586 Pfam PPR repeat family 402 450 IPR002885 -
Bpe15g00799 586 PANTHER OS06G0228900 PROTEIN 1 582 - -
Bpe15g00799 586 Gene3D Tetratricopeptide repeat domain 53 160 IPR011990 GO:0005515
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Bpe15g00799 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00799 - - - qsu:112000818 865.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g01283 Bpe-Chr14:9700179 Bpe15g00799 Bpe-Chr15:18206584 1.00E-123 dispersed
Bpe15g00799 Bpe-Chr15:18206584 Bpe12g00701 Bpe-Chr12:12563673 7.83E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00799 Bpe_Chr15 FPKM 0.0 0.0 0.0 0.289341 2.319225 1.375424 2.009912 0.70202 1.731177 1.355081