Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00813 GAGGGGAACATGGCTGAGGAGCAAGACGGCGGTCTTGAACAGGTTGTGGAGGAGGAGTTCGCTGTGTGGAAAAAGAATACACCTTTCTTGTACGACCTTGTCATTTCCCATCCTCTTGAGTGGCCATCTCTTACCGTCCATTGGGTTCCGGCGGTCCCACAGCCGCGCCACTCCCTCCCATCTCTCGCCGCCCATAAGCTCATACTCGGGACTCACACCTCGGAGGGCGTTCCGAATTTCCTCATGGTCGCCGACGCTCTTTTACCCACAAAGTCTTTGGATACCCAAATCGATGATGGAGGGGAAAATGAAATTATCCCAAAGGTGGAGATAACCCAGAAGATACGAGTTGAAGGGGAGGTGAATCGAGCTCGGTGTATGCCGCAGAACTCGGGGATTGTTGGTGCTAAAACGAGTGGGTGCGATGTTTATATATTCGATTGCGATAAACAGAAGACGAAGCCTCCAGGAGGTGAATGTGACCCGGATTTGAGACTCATTGGTCACGACAAAGAGGGTTATGGGTTGTCTTGGAGCCCCTTTAAGGAAGGTTACCTCTTGAGTGGTTCAACTGATCATAAAATTTGTTTGTGGGATGTCTCTGCTGTGGCTCAAGGCAATGTGCTTAATGCAATGAATGTCTTTGAGGCCCATGAAAGCGTGGTAGGAGATGTATCTTGGCATTCAAAGAATGAAAATTTGTTCGGTTCAGTGGGGGATGATTGTCAGCTGATAATTTGGGACTTGCGCACAAACAAAACATTGCACGTTGTCAAAGCTCATGAGAAGGAGGTGAACTATCTTTCCTTCAATCCATATAACGAATGGATCCTGGCTACCGCATCTTCAGACACTACTGTTGGTCTTTTTGATATGCGGAAGATGACAGAACCCTTGCATGTTCTTAGTAGTCACACAGAGGAGGTGTTTCAGGTAGAATGGGACCCTTTGCATGAGACTGTGTTGGCTTCTTCTGCCGATGATAGAAGACTGATGATATGGGACCTCAACAGAATTGGGGATGAGCAAGATGGAGATGCGGAAGATGGCCCTCCAGAGCTTCTATTTTCTCATGGAGGTCATAAAGCCAAGATATCGGATTTCTCATGGAACGAGCACGAGCCATGGGTAATTTCAAGCGTGGCTGAAGACAACTCCCTTCAGGTCTGGCAAATGGCCGAGAGTATTTATCGCAATGACGACGATTTGTAG 1212 48.02 EGNMAEEQDGGLEQVVEEEFAVWKKNTPFLYDLVISHPLEWPSLTVHWVPAVPQPRHSLPSLAAHKLILGTHTSEGVPNFLMVADALLPTKSLDTQIDDGGENEIIPKVEITQKIRVEGEVNRARCMPQNSGIVGAKTSGCDVYIFDCDKQKTKPPGGECDPDLRLIGHDKEGYGLSWSPFKEGYLLSGSTDHKICLWDVSAVAQGNVLNAMNVFEAHESVVGDVSWHSKNENLFGSVGDDCQLIIWDLRTNKTLHVVKAHEKEVNYLSFNPYNEWILATASSDTTVGLFDMRKMTEPLHVLSSHTEEVFQVEWDPLHETVLASSADDRRLMIWDLNRIGDEQDGDAEDGPPELLFSHGGHKAKISDFSWNEHEPWVISSVAEDNSLQVWQMAESIYRNDDDL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18277246 18279581 + Bpe001739.1 Bpe15g00813 116492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00813 403 Pfam WD domain, G-beta repeat 212 248 IPR001680 GO:0005515
Bpe15g00813 403 Pfam WD domain, G-beta repeat 297 335 IPR001680 GO:0005515
Bpe15g00813 403 Pfam WD domain, G-beta repeat 355 390 IPR001680 GO:0005515
Bpe15g00813 403 Pfam WD domain, G-beta repeat 253 291 IPR001680 GO:0005515
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 293 IPR001680 GO:0005515
Bpe15g00813 403 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 18 89 IPR022052 -
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 201 - -
Bpe15g00813 403 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Bpe15g00813 403 Gene3D - 2 403 IPR015943 GO:0005515
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 392 IPR001680 GO:0005515
Bpe15g00813 403 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 4 402 - -
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 337 - -
Bpe15g00813 403 SUPERFAMILY WD40 repeat-like 110 392 IPR036322 GO:0005515
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 337 IPR001680 GO:0005515
Bpe15g00813 403 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 257 IPR001680 GO:0005515
Bpe15g00813 403 SMART WD40_4 208 248 IPR001680 GO:0005515
Bpe15g00813 403 SMART WD40_4 295 335 IPR001680 GO:0005515
Bpe15g00813 403 SMART WD40_4 159 199 IPR001680 GO:0005515
Bpe15g00813 403 SMART WD40_4 351 391 IPR001680 GO:0005515
Bpe15g00813 403 SMART WD40_4 251 291 IPR001680 GO:0005515
Bpe15g00813 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 201 IPR001680 GO:0005515
Bpe15g00813 403 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Bpe15g00813 403 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Bpe15g00813 403 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Bpe15g00813 403 PANTHER WD40 REPEAT FAMILY 4 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00813 K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 - jre:108993430 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01753 Bpe-Chr2:19880261 Bpe15g00813 Bpe-Chr15:18277246 7.65E-13 dispersed
Bpe05g00133 Bpe-Chr5:3034469 Bpe15g00813 Bpe-Chr15:18277246 9.64E-09 dispersed
Bpe08g00522 Bpe-Chr8:3494806 Bpe15g00813 Bpe-Chr15:18277246 1.51E-67 dispersed
Bpe11g00105 Bpe-Chr11:719408 Bpe15g00813 Bpe-Chr15:18277246 1.37E-06 dispersed
Bpe13g00888 Bpe-Chr13:14967029 Bpe15g00813 Bpe-Chr15:18277246 3.56E-161 dispersed
Bpe15g00813 Bpe-Chr15:18277246 Bpe06g00002 Bpe-Chr6:25700 3.07E-14 dispersed
Bpe15g00813 Bpe-Chr15:18277246 Bpe14g00879 Bpe-Chr14:6528350 1.52E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00813 Bpe_Chr15 FPKM 146.028076 167.19722 282.516266 255.908249 197.95665 201.692108 187.218018 460.08194 484.273743 405.264801