Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00820 ATGAGTAATTCTTCTTTGTCACTTTACGAAGTTCTGGGGATTCCGGCCAGCGCGAGCTGCCACGAAATTAAATCGGCTTACAGGAGATTAGCCAGAATGTGTCATCCCGACGCCGTCGCTATAAACCAGAAGGAAAGTTCGGCGAATGAGTTTATGAAAATCCACGCAGCGTATTCAACATTATCAGACCCCGATAGAAGAGCCACTTACGATTTGAATCTTTTCCGGCGTCGGAATCCATTCGTTCCGTCGGTAAAAATGGCATCTGGTTCATCATCGGAGACTTTTTTTTCCGGTCATGTTGGTCGGAATTGGGAGACAGATCAATGTTGGTAG 336 46.13 MSNSSLSLYEVLGIPASASCHEIKSAYRRLARMCHPDAVAINQKESSANEFMKIHAAYSTLSDPDRRATYDLNLFRRRNPFVPSVKMASGSSSETFFSGHVGRNWETDQCW 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18320877 18321212 - Bpe001746.1 Bpe15g00820 116499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00820 111 PRINTS DnaJ domain signature 46 66 IPR001623 -
Bpe15g00820 111 PRINTS DnaJ domain signature 9 27 IPR001623 -
Bpe15g00820 111 PRINTS DnaJ domain signature 27 42 IPR001623 -
Bpe15g00820 111 Gene3D DnaJ domain 1 89 IPR036869 -
Bpe15g00820 111 SUPERFAMILY Chaperone J-domain 4 74 IPR036869 -
Bpe15g00820 111 ProSiteProfiles dnaJ domain profile. 7 74 IPR001623 -
Bpe15g00820 111 PANTHER - 2 111 - -
Bpe15g00820 111 Pfam DnaJ domain 8 71 IPR001623 -
Bpe15g00820 111 CDD DnaJ 9 63 IPR001623 -
Bpe15g00820 111 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Bpe15g00820 111 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 111 - -
Bpe15g00820 111 SMART dnaj_3 6 66 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00820 - - - vvi:100241895 154.836
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00115 Bpe15g00820 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00128 Bpe-Chr6:2150202 Bpe15g00820 Bpe-Chr15:18320877 3.52E-38 dispersed
Bpe11g00970 Bpe-Chr11:7217288 Bpe15g00820 Bpe-Chr15:18320877 1.66E-13 dispersed
Bpe13g00869 Bpe-Chr13:14859776 Bpe15g00820 Bpe-Chr15:18320877 2.28E-16 dispersed
Bpe15g00820 Bpe-Chr15:18320877 Bpe14g00853 Bpe-Chr14:6375160 1.35E-16 dispersed
Bpe12g00115 Bpe-Chr12:826960 Bpe15g00820 Bpe-Chr15:18320877 1.10E-61 wgd
Bpe15g00820 Bpe-Chr15:18320877 Bpe02g01729 Bpe-Chr2:19739495 1.22E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00820 Bpe_Chr15 FPKM 3.008563 3.798484 3.417482 2.743591 7.092773 6.432727 5.910892 4.11406 2.90381 3.609879