Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe15g00842	ATGAGTTTGGACAGCAGGAGTAGAAGTCGGAGCAGGAGCAGGAGCAGGAGTAGGAGCAGGAGCCCTTTGGATCGTAAGATCCGTTCTGATCGCTTTTCATATCGTGATGCACCATATAAGAGAGACTCCCATCGGGGTTTCAGTAGGGACAATCTTTGCAAGAACTGTAAGAGACCAGGCCACTTCGCTAGGGAATGCCCAAATGTTGCTGTATGTCACAACTGTGGTCTTCCTGGGCACATTGCATCTGAATGCACAACAAAATCACTTTGTTGGAACTGCCGAGAACCTGGCCATGTGGCGAGCAACTGTTCAAATGAGGGTATTTGTCATACTTGTGGCAAGGCTGGGCATCGTGCCAGAGATTGCATAGCTCCCGCTCTGCCACCTGGAGATTTGAGGTTGTGCAACAACTGCTACAAACAGGGTCACATAGCTGCTGACTGCACTAATGACAAAGCCTGCAACAATTGTCGGAAAACAGGTCATTTGGCAAGAGATTGTCCAAACGAACCCATATGCAATTTGTGCAATGTCTCAGGCCATTTGGCTAGACAATGCCCCAAATCAAACGTTCTTGGTGACAGGGGTGGGGCTGTTAGAAGCAGCGGCTTTCGAGATATCATATGTAGGAACTGCCAGCAGCCAGGCCATATGAGCAGAGACTGCATGGGCCCCTTGATGATATGTCATAATTGTGGGGGACGTGGACACCTTGCATATGAGTGTCCTTCGGGAAGGTTTATGGACCGATTTGCAAGGAGGTACTGA	771	49.29	MSLDSRSRSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYKRDSHRGFSRDNLCKNCKRPGHFARECPNVAVCHNCGLPGHIASECTTKSLCWNCREPGHVASNCSNEGICHTCGKAGHRARDCIAPALPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARDCPNEPICNLCNVSGHLARQCPKSNVLGDRGGAVRSSGFRDIICRNCQQPGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRFARRY	256

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
15	18449805	18452426	+	Bpe001766.1	Bpe15g00842	116521

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	155	170	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SUPERFAMILY	Retrovirus zinc finger-like domains	44	88	IPR036875	GO:0003676\|GO:0008270
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	210	223	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Gene3D	-	153	199	-	-
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	230	245	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	174	189	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	110	123	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SUPERFAMILY	Retrovirus zinc finger-like domains	89	125	IPR036875	GO:0003676\|GO:0008270
Bpe15g00842	256	SUPERFAMILY	Retrovirus zinc finger-like domains	130	172	IPR036875	GO:0003676\|GO:0008270
Bpe15g00842	256	Gene3D	-	203	247	-	-
Bpe15g00842	256	Gene3D	-	108	152	-	-
Bpe15g00842	256	Gene3D	-	70	107	-	-
Bpe15g00842	256	PANTHER	-	9	256	-	-
Bpe15g00842	256	Pfam	Zinc knuckle	135	151	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	71	86	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	154	170	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	109	123	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	91	105	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	52	68	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	229	245	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	209	223	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Pfam	Zinc knuckle	173	189	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	135	151	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	173	189	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	209	225	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	154	170	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	109	125	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	90	106	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	71	87	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	52	68	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SMART	c2hcfinal6	229	245	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	91	106	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	72	85	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	SUPERFAMILY	Retrovirus zinc finger-like domains	203	247	IPR036875	GO:0003676\|GO:0008270
Bpe15g00842	256	PANTHER	OS10G0545300 PROTEIN	9	256	-	-
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	53	68	IPR001878	GO:0003676\|GO:0008270
Bpe15g00842	256	Gene3D	-	43	69	-	-
Bpe15g00842	256	MobiDBLite	consensus disorder prediction	1	29	-	-
Bpe15g00842	256	ProSiteProfiles	Zinc finger CCHC-type profile.	136	151	IPR001878	GO:0003676\|GO:0008270

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe15g00842	K09250	CNBP; cellular nucleic acid-binding protein	-	jre:108999359	511.531

WGDs- Genes

Select	Gene_1	Gene_2	Event_name
	Bpe12g00094	Bpe15g00842	CCT
	Bpe12g00094	Bpe15g00842	ECH

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe15g00473	Bpe-Chr15:16077605	Bpe15g00842	Bpe-Chr15:18449805	6.55E-09	dispersed
	Bpe12g00094	Bpe-Chr12:682010	Bpe15g00842	Bpe-Chr15:18449805	5.47E-163	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi3g39	.	.	.	.	.	Bpe12g00094	.	.	Cmo19g00702	.	.	.	.	.	.	Cpe04g00102	Cpe15g00562	Bhi05g01259	.	.	.	.	.	.	Cla02g00487	Cam02g0496	Cec02g0497	Cco02g0502	Clacu02g0500	Cmu02g0495	Cre02g0828	.	.	.	.	.	Csa07g00035	.	Cme01g01346	Blo04g00539	Blo13g00534	Bda15g01066	Bda14g00579	Bpe15g00842	.	Bma03g00573	Bma08g00782	.	.	.	.	Cma19g00691	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Chy01g00746	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0004531	3	4	2	1	2	1	0	1	1	1	1	1	2	1	1	2	1	2	2	1	1	1	1	1	1	1	1	2	1	2	42

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bpe15g00842	Bpe_Chr15	FPKM	12.786661	13.048327	10.711613	9.586819	8.736326	8.570041	9.727231	10.150981	10.061628	9.573471