Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00843 ATGGAAGGCGATGAAGACGAGCCATCGAATGTTAGTGGACATTCTTTACGATTCGAGGACGACCTGGTTTCCAACCGTGACGACTGTGTGGAGTTTCCTAGCTCTGAAGTACCGTGCGAGTCGGAGGTTTTGCCCCTGGCGTCGGAGTCACAGTCTGTAGCTCCACGAATTTCTGGGGAGAATGATATTGATGTTGTTTTCGGGGAGGAGAGTGTGGAAGTGGGTGTGGATGTGGATTTAGTGACGGAGAATAGGGATCTAGCGGAGGAAATAAAGATGGCGGGGGAGGAGGTTGATGGTGATTTTGTAGAAGATATGGGAGGAGAGATAGAAGAGAAGGTCAGAACCTGTGTTACGGAGGAGCCTTCGGAAAGGCAAAATCTTGCGTCGCATTCTGCACAGGAAGTAGATGTGCATGGAATATGTGTATTTGATGCAGTGGAGTATACAGCGGGGGAAACTCTTGCGATTAGAGACGATGATGTTCAAGAGAAAGCGGAGGTAACTGGCATTTTGGGTGAGAAGGAAGACACCAAGGAGGCTGGCGAAACCGAAGCGGTGGAAGAAACTACCATTGCTAATATGACTTATGCAGTGCAGGATATAGAGGAAGTTTATATGACAAATGTTCCAGAGAAAGCAGAGGTAACTGGCATTTTGGATGAGAAGGAAGAATCTAAAGAGGCTGGCAAAAATGAAGCAGTGGAAGAAACAACCATAGCCAATATGACTTATGCAGCGCCGGATATAGAGGAAGTTAACATGACAAATGTTGTGGAGGAAACTGTGATCACAGTGAAGGAGGACGTGCCTGTCCTTGCGGAAGTAACTAAAGAGGTGGAGGTGGGTGTGACTGATGAATTCAAAGACTCAGGGTTAGTGAGTTTTGGTTATGCTGAGGATATTGATGCAGTTAATTTGACAAATGTGACCAATGTGGGATTGAAGAGGGGTGCACCAAAAAATGCAGAAGATGCTGTGAAGCCTAGTGCCACCGATGAAGAGGGGATGGATATTAAAGAAAAGTTTGATATTGTTCACAATATGGAGGCAGTTTATGTGATCAACGTGACAGAGGAGAACCAGGTAAGAGATGATGGTGATGTGCCTGACTTTGAAAAGGAGGTGGAAGAGATTAAGCCTGTCAAAGTGGTAGATGGAGAAGTGGAAACGGCAGATGCATCTGATAATGTGCATGATACTGAGACAGTATCGGCAATTAATGTAATGGAGACCACGGTGGCATTGGAAGGGAAAGTACTTGAAATGTCAGAAGGCGCGGATTATGTTAAAGACAAATTTTCTTCCTTAAAAGAGTTTGATTTAGCTATTCCATTGCAGGATTCAGAGCAGGAAGTGTACACAGATAAATTCAATGAAACTGAGACAAAGGAGAAGATGGCATATGGGGTGAATGATGTTGGAGAAGATAAAACTGAGGATGAGATGGAAAATATGGCAGATTATACTGCTGAAGATGAGATGGACAACATGGAAAATGATATTGCAGATATGGAAGAGAGGAGTAACATGAGGGAAGAGACTGTAGGAGCAATTGATATGATTAATGTCACAGATGAGATTGTTGAGGCTGAAGAGATGGATGTGTATGCACCTGATCCGACAGCAGATGAGGCTCAGGAAATGGAGCTGTTGGATGAGGTCGATGAGGCTGATGGGGTTAGCACAGGGGGTAAGAGGAAGCGGGGAAGGAATTCTAAGGCTCCAGTAAGAACGCCATCAAAGAAGAGAGTTGAAGAGGATGTTTGCTTCATTTGCTTTGATGGGGGTGACCTCGTGCTCTGTGATCGCAGGGGTTGCCCTAAAGCATATCATCCTTCATGTGTCAACCGAGATGAAGCATTTTTTCGAGCCAAGGGTCGATGGAATTGTGGTTGGCACCTTTGTAGCAATTGTGGGAAAACTGCCAATTATATGTGTCTGACCTGTACATTTTCCTTGTGCAAAAGTTGTATCAAGGATGCAATTATCTTCTGTGTGAGAGGGAACAAAGGCTTCTGTGAGACTTGCATGAAGACCGTCATGTTGATTGAAAAGAACGAGCATGGGAGCAGGGAAACGGGTCAAGTTGATTTTAATGACAAAAGTAGCTGGGAATATCTTTTTAAAGACTACTGGTCAGATGTAAAACAAAAGCTGTCTCTGACATTAGATGAGCTAACTCAGGCAAAGGTTCCTTGGAAAGGATCTGATATGCTAGCTAGTAAACAAGAATCTCCTCATGAACTTGATAATAAAGTAGATAGAGAATCTGATTCACATAGTTCTGGTAATCTTGATTCAAATGTCTCCAAAAGGAAAAAACCTAAGAAACTATTGAAGTCGCGCTTGAAAGAGAGGGATTCATCTCATTCTTCGAAAGTAACTAGTGTGGAAGGTATATCCGCAGCTGAGAGGATTGAGTGGGCATCAAAAGAGCTCTTGGAATTCGTTATGCACATGAGGAATGGGGACAGATCAGTTTTATCTCAATTTGATGTGCAGGCTCTCTTGCTAGAATATATTAAGAGAAACAAACTACGTGATCCTCGTCGTAAAAGTCAAATTGTTTGTGATATAAGGTTGGAGACTTTGTTTGGCAAACCACGGGTGGGTCATTTTGAAATGTTAAAGCTACTTGAGTCCCACTTTCTTTTGAAAGAGGATGCCATGGCTGATGATCTTCAAGGGAGTGTGGTGGATACTGAATCTAGTCAAATGGAAGTGGATGGAAACACTGATTCTGTGGTAAAGGCTGGTAAAGATAGGAAACGGAAGGGACGCAAAAAGAGTGATGGGAAAGGACTTCAATATAATGTTGATGATTATGCAGCCATTGATAGTCATAACATTAATTTGATTTACTTAAGACGTAATTTGGTTGAAGAACTTATTGATGATGTGGAAAATTTTCATAATAAGGTTGTTGGTACATTTGTTAGGATAAGGATATCAGGTAGTGCTCAAAAGCAAGATTTATATAGGCTGGTCCAAGTTGTCGGTACATGCAAAGCGGGTGAACCTTATAAAGTTGGTAAAAAGATGACTAATATCTTGTTAGAGATTTTGAATTTAAACAAGACAGAGATCATATCATCAGATATCATATCAAATCAGGAGTTCACTCAGGATGAGTGCAAGCGGCTCCGCCAGAGCATCAAATGTGGACTTCTTAGTAGGCTGACTGTGGGTGACATTCAAGAGAAAGCGATGGCATTACAAGAAGTTAGGGTTAAAGATTGGCTAGAAGCAGAGATTGTTCGACTCAGTCATCTTCGTGATCGAGCTAGTGAAAAAGGGCGTAGAAAGGAGCTCAGAGAATGTGTGGAGAAATTACAGCTTCTGAAGACGCCTGAAGAGCGACAGAGAAGATTGGAGGAAATCGCAGAAATTCATTCGGACCCAAATATGGATCCAAGTCATGAATCTGAGGAAGAGGAAGAAACCTACATTAAACCAAGAGGTAATAATGGCTTTGGAAGAAGGGGGAAGGAGATGATTTCTCCACGTAAAGGAGGCTCCACTTTGAGTGGTAACTGGAGTGGGACGAGAAATCTTTCCAACACGAATATGGAATCAAATAGGAACTCGCTTAGCAAAACCTATTCTAAGAAAGTTGATGATGCAACTGGCAGCAGCGAGATTGCAAATGACTATACCAGGAATCAAGGTAGAGAAACGAACATTCAACTACCAATCAGTGACGAAAAGGGACAACCTTATTCTGTCACAGAAATCAGTCCTAGGAAGACGCAATCCATTGTTGACTCTCACTTGTCTTCTGCTCGTGAGTTGCAAATTTCTGCAGCGCCACTGTCTACCATTGCAAACCAGACTGGGAGTAAAATCAACGAAGCAGAAAAAATGTGGCACTACAAAGATCCTTCTGGGAAAGTTCAGGGACCATTTTCTATCGTTCAGCTACGCAAGTGGAGCACCACTGGTTACTTTCCTGCTGACTTGAGAATTTGGAATAGTGCTGAGAAGGAAGATGATTCTATACTTCTGAGTGATGCATTGGCTGGAAAATTCCACAAAGATTTATTGTTGATGGATAACAGCATTCGGAAGGCTGAAATGGCACAGAACTCGAATTTGCTGTCATATTCAGGGAAATCTCAAGGACTTCCTTTACAACATATTGTTGAAAGTCGGAGTCATGGTGCTTCAGATACTCGCAGCAATCCAAGTTCTTCAGGCCATTCAGCTGCAGAAAGTTTTAGATTTCAAAATGAAGTTAGTTCTACAGTAAGGGTACCTCCTTCAATCGAGGTTCCAAAATATTCTATGGATGGAAGGACGTCCGACTATGGTATCAGAAACAAGTCAACCAACCTTCCTTCACCTACTCCTAGTTCCGGTGGAGCTAAGGGGCATCCTCCTCAATTGAATCCTCCATTGTCAGAATCCAATTCATTTCCTGGAGGAAATGCCGGACTGCAGCATTCTGTCGTGTTTACGAGAGATAGTGCTGCTAGAAGCTCTGAAGGGCAGGACAACAGCGTGGGTATAGGCTCTTTTAATACTCTTCAAATGCATACTGATTCAACCGGAGCGGCACCCTCTTTGGGAGATGTTGCATTGAACCCATCTGCTGATATAAAAAGTATTAGTGCAAACCTCCAGAGTTTAGTTCAATCTCTAAACAGCCGTACTGTTCCAATTCAAACTGAAGGGTGGGCGTCTGCCTCTGTTCCAAGACCTGAACTGAATGCTCCGGGCCCTGCAACTGTAAGTGATTCCAAAGTTTGGGGGAGTGCACAATCTTACAAGGTAGAAGCAACTAATAATTCTTCTGCTATTCCGGCACAACTTCCTCACAGTCAGTGGGTGGAACCCCAAGGGAACTTCTCAGCGGCTCCCATGTCTAATCTGCCTCCGTCCGGTGCATGGAGACCTCCTGCACAGAGCAGTCAGCCAAACATGCAGTCTCCAGCTCCCACCAATTTGCCATGGGGCATGGGGTTAGAGAATCAGAACAACACTGGGTGGGTCCCCCCGCATCAGGGAAATCCAAATATTGGCTGGACGGGTCCCATTCCTGCTGTTGTGAACCAAAATTGGGCCGCCCAGGGACCACCAGCCGGAAATGTAAATCAAGGATGGGCGGCTCCGCCTCAAGGGACAGCTCCTGGAAATGTGGTTCCTAGTTGGGGGCCGGGCACATATAATCAGCCGCCGCCACCACCACCACCGTCAAATGCAAACACTGGTTGGATCCCTCCGCCTGCAAATCCAAATCCAGGGTGGGGGCCTCCGCCAGGGAACGTGGGTGTGGGAGGAAACGAACACAGGGAGTGGGGAAGGCAGACGTCGTTCAATGGGGGAGGAGGGTTTCCGAGGCCACCATTCAAAGGACAGAGGGTGTGCAAATACCACGAGAGTGGACACTGCAAGAAAGGAGCTGCTTGCGATTATCTGCACACTTGA 5430 44.55 MEGDEDEPSNVSGHSLRFEDDLVSNRDDCVEFPSSEVPCESEVLPLASESQSVAPRISGENDIDVVFGEESVEVGVDVDLVTENRDLAEEIKMAGEEVDGDFVEDMGGEIEEKVRTCVTEEPSERQNLASHSAQEVDVHGICVFDAVEYTAGETLAIRDDDVQEKAEVTGILGEKEDTKEAGETEAVEETTIANMTYAVQDIEEVYMTNVPEKAEVTGILDEKEESKEAGKNEAVEETTIANMTYAAPDIEEVNMTNVVEETVITVKEDVPVLAEVTKEVEVGVTDEFKDSGLVSFGYAEDIDAVNLTNVTNVGLKRGAPKNAEDAVKPSATDEEGMDIKEKFDIVHNMEAVYVINVTEENQVRDDGDVPDFEKEVEEIKPVKVVDGEVETADASDNVHDTETVSAINVMETTVALEGKVLEMSEGADYVKDKFSSLKEFDLAIPLQDSEQEVYTDKFNETETKEKMAYGVNDVGEDKTEDEMENMADYTAEDEMDNMENDIADMEERSNMREETVGAIDMINVTDEIVEAEEMDVYAPDPTADEAQEMELLDEVDEADGVSTGGKRKRGRNSKAPVRTPSKKRVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSNCGKTANYMCLTCTFSLCKSCIKDAIIFCVRGNKGFCETCMKTVMLIEKNEHGSRETGQVDFNDKSSWEYLFKDYWSDVKQKLSLTLDELTQAKVPWKGSDMLASKQESPHELDNKVDRESDSHSSGNLDSNVSKRKKPKKLLKSRLKERDSSHSSKVTSVEGISAAERIEWASKELLEFVMHMRNGDRSVLSQFDVQALLLEYIKRNKLRDPRRKSQIVCDIRLETLFGKPRVGHFEMLKLLESHFLLKEDAMADDLQGSVVDTESSQMEVDGNTDSVVKAGKDRKRKGRKKSDGKGLQYNVDDYAAIDSHNINLIYLRRNLVEELIDDVENFHNKVVGTFVRIRISGSAQKQDLYRLVQVVGTCKAGEPYKVGKKMTNILLEILNLNKTEIISSDIISNQEFTQDECKRLRQSIKCGLLSRLTVGDIQEKAMALQEVRVKDWLEAEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIAEIHSDPNMDPSHESEEEEETYIKPRGNNGFGRRGKEMISPRKGGSTLSGNWSGTRNLSNTNMESNRNSLSKTYSKKVDDATGSSEIANDYTRNQGRETNIQLPISDEKGQPYSVTEISPRKTQSIVDSHLSSARELQISAAPLSTIANQTGSKINEAEKMWHYKDPSGKVQGPFSIVQLRKWSTTGYFPADLRIWNSAEKEDDSILLSDALAGKFHKDLLLMDNSIRKAEMAQNSNLLSYSGKSQGLPLQHIVESRSHGASDTRSNPSSSGHSAAESFRFQNEVSSTVRVPPSIEVPKYSMDGRTSDYGIRNKSTNLPSPTPSSGGAKGHPPQLNPPLSESNSFPGGNAGLQHSVVFTRDSAARSSEGQDNSVGIGSFNTLQMHTDSTGAAPSLGDVALNPSADIKSISANLQSLVQSLNSRTVPIQTEGWASASVPRPELNAPGPATVSDSKVWGSAQSYKVEATNNSSAIPAQLPHSQWVEPQGNFSAAPMSNLPPSGAWRPPAQSSQPNMQSPAPTNLPWGMGLENQNNTGWVPPHQGNPNIGWTGPIPAVVNQNWAAQGPPAGNVNQGWAAPPQGTAPGNVVPSWGPGTYNQPPPPPPPSNANTGWIPPPANPNPGWGPPPGNVGVGGNEHREWGRQTSFNGGGGFPRPPFKGQRVCKYHESGHCKKGAACDYLHT 1809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18455048 18464181 + Bpe001767.1 Bpe15g00843 116522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00843 1809 SUPERFAMILY FYVE/PHD zinc finger 586 642 IPR011011 -
Bpe15g00843 1809 PANTHER UNCHARACTERIZED 387 1809 - -
Bpe15g00843 1809 SUPERFAMILY Plus3-like 946 1075 IPR036128 GO:0003677
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 741 792 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1133 1228 - -
Bpe15g00843 1809 ProSiteProfiles Plus3 domain profile. 945 1078 IPR004343 GO:0003677
Bpe15g00843 1809 Coils Coil 488 515 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1436 1457 - -
Bpe15g00843 1809 SUPERFAMILY GYF domain 1279 1340 IPR035445 -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 555 580 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1721 1753 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1388 1418 - -
Bpe15g00843 1809 ProSiteProfiles GYF domain profile. 1287 1341 IPR003169 GO:0005515
Bpe15g00843 1809 ProSiteProfiles Zinc finger C3H1-type profile. 1784 1809 IPR000571 GO:0046872
Bpe15g00843 1809 Gene3D SWIB/MDM2 domain 799 893 IPR036885 -
Bpe15g00843 1809 ProSitePatterns Zinc finger PHD-type signature. 590 650 IPR019786 -
Bpe15g00843 1809 Pfam SWIB/MDM2 domain 811 884 IPR003121 -
Bpe15g00843 1809 CDD PHD5_NSD 589 634 - -
Bpe15g00843 1809 SMART PHD_3 589 635 IPR001965 -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1384 1480 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1613 1649 - -
Bpe15g00843 1809 Gene3D - 1288 1346 IPR035445 -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1489 1508 - -
Bpe15g00843 1809 SMART gyf_5 1288 1343 IPR003169 GO:0005515
Bpe15g00843 1809 CDD SWIB-MDM2_like 809 884 - -
Bpe15g00843 1809 SMART swib_2 804 889 IPR019835 -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1464 1480 - -
Bpe15g00843 1809 CDD Bbox1 635 661 - -
Bpe15g00843 1809 SUPERFAMILY SWIB/MDM2 domain 805 885 IPR036885 -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1715 1783 - -
Bpe15g00843 1809 CDD GYF 1287 1342 IPR003169 GO:0005515
Bpe15g00843 1809 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 387 1809 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 742 773 - -
Bpe15g00843 1809 SMART rtf1 945 1055 IPR004343 GO:0003677
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1133 1152 - -
Bpe15g00843 1809 Pfam Plus-3 domain 950 1053 IPR004343 GO:0003677
Bpe15g00843 1809 Gene3D - 947 1076 IPR036128 GO:0003677
Bpe15g00843 1809 Pfam GYF domain 1290 1329 IPR003169 GO:0005515
Bpe15g00843 1809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 577 682 IPR013083 -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 902 933 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1172 1228 - -
Bpe15g00843 1809 MobiDBLite consensus disorder prediction 1630 1649 - -
Bpe15g00843 1809 ProSiteProfiles SWIB/MDM2 domain profile. 803 886 IPR003121 -
Bpe15g00843 1809 ProSiteProfiles Zinc finger PHD-type profile. 587 653 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00843 - - - pavi:110750337 1436.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00463 Bpe-Chr15:16014176 Bpe15g00843 Bpe-Chr15:18455048 5.00E-08 dispersed
Bpe15g00843 Bpe-Chr15:18455048 Bpe15g00935 Bpe-Chr15:19115083 4.18E-22 dispersed
Bpe15g00843 Bpe-Chr15:18455048 Bpe13g00425 Bpe-Chr13:11869794 2.67E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22624 PF03126 Plus-3 9.20E-23 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00843 Bpe_Chr15 FPKM 1.711905 2.293453 1.184372 0.659374 2.080068 1.562854 2.251503 0.0 0.578023 0.0