Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00870 ATGCCGGTATATTCACTGGACTGGACTCCAGATAGGAATAGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATTGTGTGGAATTCTCTGACCAGCCAAAAGATCCATGCTGTAAAACTGCCTTGCCCATGGGTCATGACTTGTTCTTTCTCACCTTCTGGTCAGTCCGTTGCTTCTGGTGGTCTTGATAGTGTTTGCTCAATCATCAACCTGAATTCCCTCACCGATATGGATGGGAATCTACCAGTCGCGAAAGTGCTTAGCGGGCATAAAGGTTGTGTATCGGCCTGTCAATATGTTCCAGATGAGGATACTCACCTCATAACCAGTTCCGTGGTTTTGAACCTGGGATCTCTTCAAAACTCACATGAAGGACGGATAAGCTGTCTGGGATTGTCTGCTGACGGAAGTGCCTTGTGTACTGGTAGTTGGGATTCAAATCTCAAGGTGAGTTTGAATGCTTAG 465 45.81 MPVYSLDWTPDRNRIVSASQDGRLIVWNSLTSQKIHAVKLPCPWVMTCSFSPSGQSVASGGLDSVCSIINLNSLTDMDGNLPVAKVLSGHKGCVSACQYVPDEDTHLITSSVVLNLGSLQNSHEGRISCLGLSADGSALCTGSWDSNLKVSLNA 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18655836 18665223 + Bpe001792.2 Bpe15g00870 116549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00870 154 Gene3D - 1 150 IPR015943 GO:0005515
Bpe15g00870 154 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1 28 - -
Bpe15g00870 154 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 3 111 IPR016346 GO:0007165
Bpe15g00870 154 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 111 150 IPR016346 GO:0007165
Bpe15g00870 154 Pfam WD domain, G-beta repeat 3 28 IPR001680 GO:0005515
Bpe15g00870 154 Pfam WD domain, G-beta repeat 122 150 IPR001680 GO:0005515
Bpe15g00870 154 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 3 111 - -
Bpe15g00870 154 PRINTS Beta G protein (transducin) signature 34 49 IPR001632 -
Bpe15g00870 154 PRINTS Beta G protein (transducin) signature 15 29 IPR001632 -
Bpe15g00870 154 PRINTS Beta G protein (transducin) signature 52 69 IPR001632 -
Bpe15g00870 154 SMART WD40_4 2 28 IPR001680 GO:0005515
Bpe15g00870 154 SMART WD40_4 109 152 IPR001680 GO:0005515
Bpe15g00870 154 SMART WD40_4 31 70 IPR001680 GO:0005515
Bpe15g00870 154 SUPERFAMILY WD40 repeat-like 2 150 IPR036322 GO:0005515
Bpe15g00870 154 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 37 IPR001680 GO:0005515
Bpe15g00870 154 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 111 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00870 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - sspl:121746417 201.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00870 Bpe-Chr15:18655836 Bpe04g00582 Bpe-Chr4:3717988 1.63E-10 dispersed
Bpe15g00870 Bpe-Chr15:18655836 Bpe05g00343 Bpe-Chr5:17374556 8.31E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0035669 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00870 Bpe_Chr15 FPKM 2.62736 2.598089 9.191124 11.057142 8.934442 10.80431 12.813805 12.226382 11.167139 12.583652