Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00871 ATGGAGGAGATGCACGGCGACGCCGGAACCCTATCCTTCTCCGGCGTAGAATCTCCCTCGTTGGAGCCGGCATCGTCGCGTCGCCGCGCAGGAGCTCAGAAGCGGAAAGCCAGCAGCCTAGGGCTATCGAATAGCTTGACCACGCCTTCAAAACGCATCACCAGAGCTCGCCAGGTCCCCAGCAACCTGGCTGCTACCGCCTCGGATTTTTCGGCCGGAGGAGTGGATGCCCCTGCCAGCTCAGTGAAGGCGGAGATCACTACTAGTCTGGGAGTTCCTCGGGTAGAAGCGGTGTTTTCGCCGACTGTCGCTGAGAAATTGAACAAAGAGAGTAAATTGGAGGCTCTGGAGGCTTCGTTCGAAGCTAAGTTTGAAGCTATTAGATCGCGTGGTGCCAATGCTCACGTGGTTCCAAATCATTGCGGTTGGTTTTCATGGAATCATATACACCCTATAGAGGAGCGCACAATGCCTACTTTTTTCGATTCTAAAACTGAGACTCGAACTCCAGATATTTATACAGAGATACGTAATTGGATTTTGAAGAAATTCCATTCAAATCCAAATGTACAAATAGAATTGGAGGATTTGTCGGAGCTTGAATCTCGAGACTCAGATGCGAAACAAGAGGTAATGGAGTTTTTAGATCACTGGGGTCTGATTAATTTCCACCCATATCTACCCAGTGCAGAAAGTTCTTCTCCTACCAACACTATTGAAGATAAGTTGCCAAATGACCCATTGATCGAAAAGTTATATCGCTTTGAAACATTGAATTCTTGTTCATCAATACCTCCAAAGACTACTATTGCTCCAGCATTGCCATCTGGATTGTTTCCAGAAAAAACAATTGCCGAAGATTTAATGAAACCCGAGGTCCCAGCTTACCATTGCAACTCCTGTTCAGCTGATTGCTCTCGCAAGCGTTACCATTGTCAGAAGCAGGCAGACTTTGATTTATGCACGGAGTGCTTTAACAATGGGAAATTTGACTCTGACATGTCTTCATCGGATTTTATTCTCATGGAGCCTGCTGAGGTTCATGGGGTGAGTGGCGGAAAGTGGACAGATCAGGAGACTCTCCTCCTCCTTGAAGCTTTAGAACTTTATAAAGAAAACTGGAACGAGATTGCTGAGCATGTTGCAACAAAAACGAAGGCTCAATGTATACTGCATTTCCTTCAAATGCCAATTGAGGACACCTTTCTTGATTTCAACGAGGATTTAGATTCTATTTCCAAAAAACCCGAGGTTCCACTTTCAAAAGAAACTGATTTGGCAATCCTTGAAGATGCTGCTGAAGTAACTGATGGTAAAATTGGTGTTAAGGAGGAGCAGCCTCCAACTTCCCACACTGAAGCTGCCAAGGAAGAAGATGCTGGTGAAAGTAACATGAAAAATTCAAAAGTAGAAGAAGGGAGGGAAATGAAAGATGCCCAAGGAAGTTCAAAATCTGAAAATGGTCACCTGGAGATTAGTGAAAGTGAAAACTGTGCGTTGAAGGCTCTAAAAGAAGCTTTTGAAGCCATTGGATCTCTTTCAATACCTGAATGCTCGTTTTCATTTAGTGATGTGGGGAACCCTGTTATGGCATTGGCGGCATTCCTAGCCAGATTAGTTGGCCCAGAAATTGCTAGTGCATCATCCCATAATTCTTTAAAGGCCATATCTGGAAGTTCTCCCAGCATGGAACTGGCTGCAAGATATTGCTTCTTTTTGGAAGACCCGCCTGATAGCAAGGAAGAACTTAATTGCAGTGGGAGTGTTGGCGGGACTAGACCAAATGATGAAAGTCAACATGTTGAGCAAAACGACAGCACTTTTTTGAACGAACCAAAAAATGCAGAGCTATCAAAGGATGACATTGACAGGGAGAATTTTATGAAGGGGTCGGATCTCAAGTCCGTGGTGGGTGTTGAACCGACTACTGAGGTGGAAGAGGGAATGCGTAGAAGAGGGTCTTCTAAACCAACTGCAACAACAGATGCAGGTACTCCAGAATTGCCGTCCTTGGAAAAGAATGGTCTCCAGGAGCCAGCTACAATTAATTGTGTTGATGAGACTGCCCATTCAATGAAGGACGAGGAAACGAAACTGGATCCAGTGCCCTTGTCAAAAAATGGACCTTTGCAACCTGTTGTAACTAGTCCATCTGGACGGGACATGGAACCTAGAATAGCGCAAAAAGATGCTGACAGTGTGCCGGAATGTCACCTGGAAACATCAAATTTTGTGGGGGACAATGGAGAAAGTGCGACTTGGCAAACTAAAGAATGCCTACCATGTCTGGCAGCATTACCGGATTATTGTCATTTTACAGGTGAAGTTGAAGTGAGAGTTATTAATAAAGAGGTTGGTGGCTTTAAAGTTAGACAGAATAATGATAAAATTGATAAGTTGAAAAATGCTGCGGTTACTGCACTATCAGCGGCAACTGTAAAAGCAAGACTTCTGGCCAAGGAGGAAGAGGAACAAATCCGACAGCTTGCTGCCTTCTTGATAGAAAAGCAGTTGAACTCAATAGAACAACCAAATTGCAAGAAAATAACCTCAAATTCTATTCAAATTATCACCAGACTTCTGTATCTGCTGAATCAGGGAGACATCTTCACCAAGATTGGAGAGACAGAAGTTTTCTTTGCGGTGACAAAGCTTTTCCAGTCAAGAGATACAGGGTTGAGAAGAATGGTTTACTTAATGATAAAGGAGCTCTCTCCTTCTGCTGATGAGGTTATTATTGTAACAAGCTCTCTGATGAAGGACATGAATAGCAAGACTGATATGTACAGGCCCAATGCCACCCCAGTGTTGCAATTTGCAGTTGTTCGCACTTTGAACAAGGTGGCAATTACTCATCCAATGGTTGTCACTAATTGCAACATTGATTTGGAAATCTTGATTCCTGACCAAAATAGGAGCTTAGCAACTCTTGCTATTACCACACTTCTCAAGACTGGAAATGAGTCCAGTGTTGATAGATTAATGAAGCAGATAACAAATTTCATGTCGGATATTGCCGATGAATTCAAAATTGTTGTAGCAGAAGCCATACGATCTTTGTGTTTGAAGTTTCCTTTGAAATACAGATCTCTGATGAATTTCTTGAGCAACATTCTGAGAGAAGGTGGATTTGAATATAAAAGGGCTATTGTTGATTCAATTGTCATCCTTACAAGCGATATTCCTGGCGCAAAAGACAGTTGGTTGCTTCATTTGTGCGCATTTATTGAAGACTGTGAATTCACCTATCTATCCACCCAGGTGTTTCCATCTGAAGAACTTTTTGATATTAATGTGGTCCCCAAGGAGATTAAAACTCAACCACTTGCTGAGAAGAAAGCCCTGGGTAAAAAGCCGACAGGGCTTGGTGCTCCTCCTTCTTGCGCACCTGTAGAGTTGTCAGAAGTTTATGTAATCGTCAATGCTTCAGAAGCAGAGGAATTTTCTGAAATTGCATCCCACCCTCTCAGATCTCTTCCTTATGATACACCTGGACAGACCTTTGTGACATTTGAGAGGGCTGAAGGAGTCTCCACTGTTGGAATTGACCCAAGAAATGGAGAGGCAGAGGAAGATGGTTTGGAAGACGAATACCAGTTGGAAGACCTTGAGGTTGTTGCTCCTGATTACATGTTGAAAGTAGGAGTCTCTAATTTTAGGAGTGCTTGGGAAAGCATGGGTGCAGATTGTGAGCGTGGAACTGAAGTTGTTGCAAGCAATTCAAGGTCGCACACATGCTTGTTATCTGGAGTATCCATTGGCAATGTCAATGTGCTGGTGCGGCTTTCTGTCGGTATTGATGCTTCCAGAGAGGTTGCAATGAAGCTGGCCGCCAGATCTGAGAATGAAGCCGTCAGGGACATCATTCACGAAATTGTGGCAAGTGGTTAG 3891 43.77 MEEMHGDAGTLSFSGVESPSLEPASSRRRAGAQKRKASSLGLSNSLTTPSKRITRARQVPSNLAATASDFSAGGVDAPASSVKAEITTSLGVPRVEAVFSPTVAEKLNKESKLEALEASFEAKFEAIRSRGANAHVVPNHCGWFSWNHIHPIEERTMPTFFDSKTETRTPDIYTEIRNWILKKFHSNPNVQIELEDLSELESRDSDAKQEVMEFLDHWGLINFHPYLPSAESSSPTNTIEDKLPNDPLIEKLYRFETLNSCSSIPPKTTIAPALPSGLFPEKTIAEDLMKPEVPAYHCNSCSADCSRKRYHCQKQADFDLCTECFNNGKFDSDMSSSDFILMEPAEVHGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFLQMPIEDTFLDFNEDLDSISKKPEVPLSKETDLAILEDAAEVTDGKIGVKEEQPPTSHTEAAKEEDAGESNMKNSKVEEGREMKDAQGSSKSENGHLEISESENCALKALKEAFEAIGSLSIPECSFSFSDVGNPVMALAAFLARLVGPEIASASSHNSLKAISGSSPSMELAARYCFFLEDPPDSKEELNCSGSVGGTRPNDESQHVEQNDSTFLNEPKNAELSKDDIDRENFMKGSDLKSVVGVEPTTEVEEGMRRRGSSKPTATTDAGTPELPSLEKNGLQEPATINCVDETAHSMKDEETKLDPVPLSKNGPLQPVVTSPSGRDMEPRIAQKDADSVPECHLETSNFVGDNGESATWQTKECLPCLAALPDYCHFTGEVEVRVINKEVGGFKVRQNNDKIDKLKNAAVTALSAATVKARLLAKEEEEQIRQLAAFLIEKQLNSIEQPNCKKITSNSIQIITRLLYLLNQGDIFTKIGETEVFFAVTKLFQSRDTGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTDMYRPNATPVLQFAVVRTLNKVAITHPMVVTNCNIDLEILIPDQNRSLATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVAEAIRSLCLKFPLKYRSLMNFLSNILREGGFEYKRAIVDSIVILTSDIPGAKDSWLLHLCAFIEDCEFTYLSTQVFPSEELFDINVVPKEIKTQPLAEKKALGKKPTGLGAPPSCAPVELSEVYVIVNASEAEEFSEIASHPLRSLPYDTPGQTFVTFERAEGVSTVGIDPRNGEAEEDGLEDEYQLEDLEVVAPDYMLKVGVSNFRSAWESMGADCERGTEVVASNSRSHTCLLSGVSIGNVNVLVRLSVGIDASREVAMKLAARSENEAVRDIIHEIVASG 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18666462 18685269 - Bpe001793.1 Bpe15g00871 116550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00871 1296 SMART zz_5 292 336 IPR000433 GO:0008270
Bpe15g00871 1296 ProSiteProfiles SWIRM domain profile. 135 232 IPR007526 GO:0005515
Bpe15g00871 1296 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 34 842 - -
Bpe15g00871 1296 Gene3D - 141 226 IPR036388 -
Bpe15g00871 1296 Pfam Zinc finger, ZZ type 295 330 IPR000433 GO:0008270
Bpe15g00871 1296 SUPERFAMILY Homeodomain-like 142 224 IPR009057 -
Bpe15g00871 1296 ProSiteProfiles Myb-like domain profile. 353 397 IPR001005 -
Bpe15g00871 1296 Gene3D - 350 401 - -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 585 613 - -
Bpe15g00871 1296 SUPERFAMILY Clathrin adaptor appendage domain 1132 1209 IPR013041 -
Bpe15g00871 1296 Pfam SWIRM domain 138 223 IPR007526 GO:0005515
Bpe15g00871 1296 CDD ZZ_RSC8 296 340 IPR041984 -
Bpe15g00871 1296 Pfam Adaptin N terminal region 835 933 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bpe15g00871 1296 Pfam Adaptin N terminal region 937 1085 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bpe15g00871 1296 ProSitePatterns Zinc finger ZZ-type signature. 298 324 IPR000433 GO:0008270
Bpe15g00871 1296 Gene3D - 1230 1294 IPR012295 -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 437 491 - -
Bpe15g00871 1296 Gene3D - 827 934 IPR011989 -
Bpe15g00871 1296 Gene3D - 935 1089 IPR011989 -
Bpe15g00871 1296 ProSiteProfiles SANT domain profile. 350 401 IPR017884 -
Bpe15g00871 1296 SUPERFAMILY ARM repeat 935 1082 IPR016024 -
Bpe15g00871 1296 Pfam Coatomer gamma subunit appendage platform subdomain 1133 1205 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 693 722 - -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 37 59 - -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 584 617 - -
Bpe15g00871 1296 Pfam Myb-like DNA-binding domain 353 395 IPR001005 -
Bpe15g00871 1296 SMART sant 351 399 IPR001005 -
Bpe15g00871 1296 CDD SANT 371 396 IPR001005 -
Bpe15g00871 1296 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 1210 1293 IPR009028 GO:0006886|GO:0016192|GO:0030117
Bpe15g00871 1296 ProSiteProfiles Zinc finger ZZ-type profile. 293 347 IPR000433 GO:0008270
Bpe15g00871 1296 PANTHER SWI/SNF COMPLEX-RELATED 34 842 - -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 638 679 - -
Bpe15g00871 1296 Gene3D Coatomer, gamma subunit, appendage domain 1130 1206 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Bpe15g00871 1296 SUPERFAMILY ARM repeat 822 933 IPR016024 -
Bpe15g00871 1296 SUPERFAMILY RING/U-box 291 344 - -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 1 59 - -
Bpe15g00871 1296 SUPERFAMILY Homeodomain-like 350 402 IPR009057 -
Bpe15g00871 1296 MobiDBLite consensus disorder prediction 437 484 - -
Bpe15g00871 1296 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 1231 1293 IPR032154 -
Bpe15g00871 1296 Gene3D - 293 341 IPR043145 -
Bpe15g00871 1296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 353 401 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00871 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - jre:109003292 743.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00078 Bpe15g00871 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01767 Bpe-Chr2:19971999 Bpe15g00871 Bpe-Chr15:18666462 5.45E-36 transposed
Bpe04g00010 Bpe-Chr4:104811 Bpe15g00871 Bpe-Chr15:18666462 4.32E-06 transposed
Bpe10g00478 Bpe-Chr10:12041357 Bpe15g00871 Bpe-Chr15:18666462 1.58E-30 transposed
Bpe12g00472 Bpe-Chr12:10485787 Bpe15g00871 Bpe-Chr15:18666462 3.94E-34 transposed
Bpe15g00755 Bpe-Chr15:17924232 Bpe15g00871 Bpe-Chr15:18666462 3.79E-09 transposed
Bpe12g00078 Bpe-Chr12:535779 Bpe15g00871 Bpe-Chr15:18666462 2.72E-36 wgd
Bpe15g00871 Bpe-Chr15:18666462 Bpe05g00344 Bpe-Chr5:17378685 1.90E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g582 Blo02g00800 . . Bda08g00925 . Bpe12g00078 . . Cmo19g00674 . Cma02g00404 . Car02g00264 Car20g00739 Sed05g2322 Cpe04g00125 Cpe15g00534 Bhi05g01224 Tan02g0807 Cmetu01g1965 . Hepe02g0514 . . Cla02g00528 Cam02g0546 Cec02g0547 Cco02g0553 Clacu02g0547 Cmu02g0542 Cre02g0873 Cone12ag1147 Cone8ag1195 Cone3ag1158 . Lsi10g00358 . Chy11g00388 Cme01g01429 Blo04g00508 Blo13g00555 . Bda14g00549 Bpe15g00871 . . . Sed01g0309 Cmo02g00409 Cmo20g00865 . Cma19g00660 . Car19g00503 . Cpe05g01253 Bhi10g02020 Tan05g1319 Cmetu11g0171 . Hepe08g1023 . . . . . . . . . Lsi11g01096 Csa02g01249 Chy01g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00871 Bpe_Chr15 FPKM 6.059383 6.675033 5.494708 6.015534 4.460863 4.068696 4.557627 4.423265 4.310203 6.52018