Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00884 ATGCCGCGACCGTATTTCTACAAGCTTGTTCTTTCTTCAACCATCCAAGCCAAACAACTGAGAATTCCAGACAATTTCGTGCGGAAGATTCGAGATGAGCTTTCTGCAGTTGCTACGCTTGCTGTTCCTGTTGGTCACGTATGGCATGTAGGACTAAGAAAAGCTGATAACAAGTTTTGGTTTAGAGAAGGGTGGCAGGAATTTGTTGACCATTATGCGATACGTGTTGGTTACTTTTTGCTATTCAAATACGAAGGGAATTCTTCTTTTGTTGTTTACATATTCAATCTAAGTACGTCTGAGATTAATTATCAATCGGCCAATCTCAGAAATAGTCAAGCATTCAAGTATTGCAATCAAAATGCTGTATTTGAAGAAATCGAAGATGATGACTCAGGTGATATTGTGGGTTCTTCACTTCCGAGCTTGATTTCTGAAAGAAACAAAGCGTTTAACGAAGGTTCAGATCAACTGAGATCTTCCAAAAATTTTAGTCCTCCGGCACTGCAGAATTTGTTTAATGGATCAAAACTGAATTGTATAAATTGGTCCAACGAAGGTACCGCGCATCCATCAAAGGGGGGCCGTAATTTGACAACCGATTTTCAATCTATACGAAATAGTGGGGTTCTAATTAGTCATTCTGAGTCCAAAAAAACTGTGGACAGCGTGAAACGGGAGATGGTGGACGAGGATGTACAAAAACTAAAAAATGATGGAAGGAAGAAGAGGAAAATGGATGGTAATGAGCAAGGGCCATCCACTCAAAATGAGGAGGAAGTTGAAATGCGATATAGGTTTTATGAAAGTGCTTCTGCCAGAAAGCGGACAGTGACTGCCGAAGAAAGAGAAAGGGTCGTCAGTGCATCCAAAGCTTATGAGCCTATTAATCCCTTTTGTCGAGTTGTTTTGCGACCATCCTATCTATATCGAGGCTGTATAATGTACTTGCCATCTTGTTTTGCCGAAAAGAATCTAAGCGGGGTTTCAGGATTCATCAAACTTCAGATTTCTGATGGACGACAGTGGCCCGTCAGATGTCTTAACAAAGGCGGCAAAACTAAGTTTAGCCAAGGTTGGTATGAATTTTGCTTGGAGAATAATTTAGGAGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTTAAAGTTACCATGTTTCCCGTTATGGAAGACGCCAGATGCGCTAACCCAACTCCGTTGCAGAGCTACAGCCATAGTAAGCTGGTTAGAAATTAA 1254 40.99 MPRPYFYKLVLSSTIQAKQLRIPDNFVRKIRDELSAVATLAVPVGHVWHVGLRKADNKFWFREGWQEFVDHYAIRVGYFLLFKYEGNSSFVVYIFNLSTSEINYQSANLRNSQAFKYCNQNAVFEEIEDDDSGDIVGSSLPSLISERNKAFNEGSDQLRSSKNFSPPALQNLFNGSKLNCINWSNEGTAHPSKGGRNLTTDFQSIRNSGVLISHSESKKTVDSVKREMVDEDVQKLKNDGRKKRKMDGNEQGPSTQNEEEVEMRYRFYESASARKRTVTAEERERVVSASKAYEPINPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQISDGRQWPVRCLNKGGKTKFSQGWYEFCLENNLGEGDVCVFELIKAREIVLKVTMFPVMEDARCANPTPLQSYSHSKLVRN 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18785156 18787723 - Bpe001805.1 Bpe15g00884 116563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00884 417 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Bpe15g00884 417 Pfam B3 DNA binding domain 303 391 IPR003340 GO:0003677
Bpe15g00884 417 MobiDBLite consensus disorder prediction 236 259 - -
Bpe15g00884 417 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Bpe15g00884 417 Gene3D - 1 99 IPR015300 -
Bpe15g00884 417 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Bpe15g00884 417 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Bpe15g00884 417 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 415 - -
Bpe15g00884 417 CDD B3_DNA 298 393 IPR003340 GO:0003677
Bpe15g00884 417 SUPERFAMILY DNA-binding pseudobarrel domain 295 395 IPR015300 -
Bpe15g00884 417 Gene3D - 277 397 IPR015300 -
Bpe15g00884 417 SMART B3_2 300 395 IPR003340 GO:0003677
Bpe15g00884 417 SMART B3_2 6 98 IPR003340 GO:0003677
Bpe15g00884 417 CDD B3_DNA 4 96 IPR003340 GO:0003677
Bpe15g00884 417 PANTHER B3 DOMAIN-CONTAINING 1 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00231 Bpe-Chr6:12415871 Bpe15g00884 Bpe-Chr15:18785156 1.37E-11 dispersed
Bpe10g00208 Bpe-Chr10:7463834 Bpe15g00884 Bpe-Chr15:18785156 1.67E-09 dispersed
Bpe13g00931 Bpe-Chr13:15221487 Bpe15g00884 Bpe-Chr15:18785156 7.93E-09 transposed
Bpe12g00069 Bpe-Chr12:482836 Bpe15g00884 Bpe-Chr15:18785156 0 wgd
Bpe15g00884 Bpe-Chr15:18785156 Bpe05g00071 Bpe-Chr5:1243427 5.92E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22632 PF02362 B3 6.90E-18 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00884 - - mnt:21409635 560.836