Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00890 ATGGATCGATCGGCGATCACTGTGGGTCCGGGAATGGATATGCCGATTATGCATGATAGCGATCGATACGAGCTTGTCCGAGATATCGGTTCAGGAAACTTTGGGGTTGCCAGGCTGATGAGGGACAAGCAGAGTGGGGAGCTCGTTGCTGTCAAATACATGGAGAGAGGTGAGAAGGTTAGTTTCCAACTCATGGCAATAGATGCAAATGTGAAAAGGGAAATTATAAATCACAGATCTTTGAGGCATCCCAACATTGTCAGATTCAAGGAGGTAATATTAACACCAACCCACCTAGCTATCGTGATGGAATTTGCATCTGGAGGAGAACTCTTTGAGCGGATCTGTAATGCTGGGCGGTTCAGTGAGGATGAAGCACGCTTCTTTTTCCAACAACTTATATCAGGTGTCAGTTACTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAACTGGAGAATACGTTGTTGGATGGAAGTCCTGCTCCTCGATTGAAGATCTGCGATTTTGGGTACTCCAAGTCCTCTGTACTGCATTCACAACCAAAATCAACTGTCGGTACTCCTGCATATATTGCTCCCGAAGTGTTGCTTAAGAAAGAATACGATGGCAAGATTGCGGATGTGTGGTCATGTGGAGTTACCTTATATGTCATGTTAGTGGGTGCATACCCGTTTGAAGACCCCGAGGACCCTAAAAATTTCCGAAAAACAATTCAGAGAATTTTGAACGTCCAGTATTCAATTCCAGACTATATTCATATATCTTCTGAATGTCAGCATTTGATATCCAGGATTTTTGTTGCAGAGCCAGCAAAGAGAATAACAATTTCTGAGATAAGAAACCATGAATGGTTTAAAAGAAATCTTCCGGGCGATCTCATGGATGAAAATAAAATGGAGAATGGTTTTGTCGAGCCTGATCAACCCATGCAAAGCATTGATGAAATTATGCAGATAATAGCAGAAGCCGCCATTCCAGCAGCTGGAACCCAGAGTCTCAACCATCATCTCACTGGCAGCCTTGACATTGACGATGATGACATGGAAGAGGATCTAGACAGCGATCCTGATCTCGACATTGATAGCAGTGGAGATATTGTGTATGCAATG 1113 43.58 MDRSAITVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKQSGELVAVKYMERGEKVSFQLMAIDANVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEFASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQRILNVQYSIPDYIHISSECQHLISRIFVAEPAKRITISEIRNHEWFKRNLPGDLMDENKMENGFVEPDQPMQSIDEIMQIIAEAAIPAAGTQSLNHHLTGSLDIDDDDMEEDLDSDPDLDIDSSGDIVYAM 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18815845 18819148 - Bpe024589 Bpe15g00890 116569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00890 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Bpe15g00890 371 Gene3D Phosphorylase Kinase; domain 1 1 105 - -
Bpe15g00890 371 MobiDBLite consensus disorder prediction 345 365 - -
Bpe15g00890 371 SUPERFAMILY Protein kinase-like (PK-like) 15 312 IPR011009 -
Bpe15g00890 371 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Bpe15g00890 371 Gene3D Transferase(Phosphotransferase) domain 1 106 293 - -
Bpe15g00890 371 Pfam Protein kinase domain 23 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe15g00890 371 MobiDBLite consensus disorder prediction 345 361 - -
Bpe15g00890 371 SMART serkin_6 23 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe15g00890 371 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 14 366 - -
Bpe15g00890 371 PANTHER SERINE/THREONINE KINASE 14 366 - -
Bpe15g00890 371 ProSiteProfiles Protein kinase domain profile. 23 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00890 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - gmx:100804702 634.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01127 Bpe-Chr2:14898280 Bpe15g00890 Bpe-Chr15:18815845 4.00E-121 dispersed
Bpe14g00461 Bpe-Chr14:4163458 Bpe15g00890 Bpe-Chr15:18815845 2.61E-119 dispersed
Bpe15g00890 Bpe-Chr15:18815845 Bpe08g00623 Bpe-Chr8:5144494 3.01E-70 dispersed
Bpe11g01837 Bpe-Chr11:14778404 Bpe15g00890 Bpe-Chr15:18815845 4.11E-153 transposed
Bpe15g00347 Bpe-Chr15:15022554 Bpe15g00890 Bpe-Chr15:18815845 0 transposed
Bpe15g00375 Bpe-Chr15:15308459 Bpe15g00890 Bpe-Chr15:18815845 5.39E-157 transposed
Bpe12g00067 Bpe-Chr12:473835 Bpe15g00890 Bpe-Chr15:18815845 9.83E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63782 PF00069 Pkinase 2.20E-70 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00890 Bpe_Chr15 FPKM 12.773104 14.128874 16.791498 17.225187 16.778778 14.806565 18.048552 18.618618 17.727861 17.406574